Gene

KWMTBOMO00211

Pre Gene Modal

BGIBMGA000630

Annotation

PREDICTED:_WD_repeat-containing_protein_47_[Papilio_xuthus]

Location

Bomo_Chr1(+):6576261-6636040      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.605

CDS

ATGCCGTCAACCCACCTAAATCTCCGAGAAGATGACGTTGTCCGTTTGTCACTCGAGTTCCTCCATAACAGAGACCTTCACATCACACAGCTTTCCTTAGAAAGAGAAACCGGCGTAATAAACGGCAACTACGCAGATGACGTTTTGTTTTTGAGACAGCTAATCCTTGATGGACAATGGGATGATGTGTTGGAATTTATTCAACCGCTTAGTGCACTTAAAACGTTCGAAGCAAACAAGTTTAATTATGCTATATTGAGACACAAATACATAGAATTATTATGCATAAGGTCTGAAATTAAAGCCTATAACAACGTCGAGAACATTGTTGAAGAAGTTGTTAAGGTATTGAGTGAATTAGAAAAAATAGCCCCATCGAAAGAAGAATATTCCAATTTATGTTTGTTATTGACATTGCCGAGTATAACCGATCATGCTCAGTTTAAAAAATGGAATCCAAGCAATGCGCGTGTTCAATGTTTCAGAGAAGTATATCCGCTGGTCGAGCAGTTTTTGCCTTGCGATAAAAAATCATCGAGCGGCACCATATCAAAGTGCGCCAAGAATGATCGGCTAATGCAATTGTTAATCAAGGGAATATTGTATGAATCTTGCGTGAACTATTGCCAAGCTAAAGCAACTGGATCAAAGGAAGCACAGTCGAACGACGTTACGTTTTCAAGGCTCCTTGACGGCTCAGGATTTGATGAATCCGATTTGAGCTTACTGTCATGGCTACAGTCGATTCCAGCAGAAACGTTCAGTGTACCGTTCGAACAAAGAATGTTAAATGTTGATGTAGAAAAACTAGAACGGCCTTCATTGCACACGTCATGGACTGAACACATGCTCGTCACGCCTATTAAGCCGCGGACATTCCCACATTTGGCTATGCCGTTCAGACGGCCACGCTCAGCAGCGGACGCTATGACTAGGTCATTACGTCCACTTCCTGACGGTGCACCGAGACATCCCGCTCTCATGGCACTTTCGGCCATAGATTATGGTCCTTCGTCATCATGTTTTGCCGGATTTCATTTAACCGGAATAAAAGGCAGTAAGCTGATGAATACGTCTGTGGATAGGCTATTCGACAGTCCAACTGGGGACGGCATATTTGAAGACCTCAATGATACTCTGAAGCCTATCGCTGAGCAAGTGAAATTGTCCGAAGATAGTCCGCCCGCGAAACTAAATGAAGGTAGTAGCATCGGTGCGTCTAACGCCACGACACCTGAACACAGAGCCCAAGATTACTCTGCGTCAACGTCAGTTTCGAACACTGCGGCTTCGACTGAACGCTCATCGCTCGCGGAGCGTGCGCCGCCGAGAGTCGAGCATGCGGTCGTACACGCTACGGATGGTGATTTCAGACGCGACTTGCTTAAAGAATATCAAATACAAAAGCAACGCGAGTGTGACGACTACATCAGAAATCTCTGTTCGTCTGAATCGAGGCAACCGAAATCAATGGAGCAAGTAACCGATGCCCCAGCCGGATTTTCGACAGCTGCCAAGAGTCAACAACAATTCGCCAACAGACCGCCAATTGAGGAAAAGCCCAGGGAACAAATGCTTTACGGCAGGAATCAGCGAAGTGAAATCAGTGAATCGTCAGACGTGGGAGAACCCTCTACGATGCAGACAAGAAATGGCGGCCCACAATCATCTACTCCTGTCCCAGGTCCGACAGCTGTAGGGATTGAATCCAGTGATTCAAGACCGACTTTCAAGCCCGTGACAGTGCTTGAGGATTTGCAGGCGGTCCGGTGTGCCGAATTCCATCCCAACGGGAAGCTGTACGCTGTTGGGTCGAACACCAAAACGTTAAGGATATGTTCGTATCCGAAGATCGAGGATGTCAAGGACAACAGCGCTCCCACAGCGCCGACGGTGCTTCTCAAAAGAACCAAACACCACAAGGGGAGTATTTACTGCCTCGCATGGAGTCCCGCTGGTGATCTACTAGCCACAGGCTCTAATGATAAAACCGTAAAATTAATGGCGTTCAACACGCACGCTTGCAATTTGGAAGGACAAGAGGTGGAATTGACGGTACACGACGGTACTGTCCGCGACGTGTGTTTCATCGAGGACACGACAAACAAGACCAGTCTGCTGGTGAGCGGCGGAGCCGGCGACTGCAAGATATACGTCACCGATTGCATCATAGGGAAGACCTTCCAGGCTCTAAGCGGCCATTCTGGACACGTTTTATCGCTGTATAACTGGGGTGGTGCTATGTTCGTGTCTGGCAGTCAGGATAAGACAGTGCGTTTCTGGGATCTCCGCACCGGGGGTTGTGTCAACATAATATCCCCACCAGCGGGTCAGCCTAGTAAGGGTTCAGCGGTCGCGTCACTCGCGGTCGACCCGAGCGGGCGGCTGCTGGTGTGCGGACACGATGACGGAACTTGCGCGCTACACGACGTACGGGGTTCGAGGGCCCTGCAGCGTTTCACGCCGCACTCGAGCGACGTCCGTAGCGTTCGTTTCTCTCCCGGCGCGTACTATCTGCTGACTGCCGGCTACGACGGCAGGGTCGTGCTTGCCGATTTGCAAGGCGATTTGACTTGTCCGTTGCCAAGCGTGCCCGTCGCTCGACATCCGGACAAAGTGATCTCGGCCCGATGGCATCCCGACGACTTCTCGTTTCTATCGACCTCGGCCGACAAGACGGCCGTGCTGTGGACCATACCGCCGGTCTAA

Protein

MPSTHLNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFIQPLSALKTFEANKFNYAILRHKYIELLCIRSEIKAYNNVENIVEEVVKVLSELEKIAPSKEEYSNLCLLLTLPSITDHAQFKKWNPSNARVQCFREVYPLVEQFLPCDKKSSSGTISKCAKNDRLMQLLIKGILYESCVNYCQAKATGSKEAQSNDVTFSRLLDGSGFDESDLSLLSWLQSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKPRTFPHLAMPFRRPRSAADAMTRSLRPLPDGAPRHPALMALSAIDYGPSSSCFAGFHLTGIKGSKLMNTSVDRLFDSPTGDGIFEDLNDTLKPIAEQVKLSEDSPPAKLNEGSSIGASNATTPEHRAQDYSASTSVSNTAASTERSSLAERAPPRVEHAVVHATDGDFRRDLLKEYQIQKQRECDDYIRNLCSSESRQPKSMEQVTDAPAGFSTAAKSQQQFANRPPIEEKPREQMLYGRNQRSEISESSDVGEPSTMQTRNGGPQSSTPVPGPTAVGIESSDSRPTFKPVTVLEDLQAVRCAEFHPNGKLYAVGSNTKTLRICSYPKIEDVKDNSAPTAPTVLLKRTKHHKGSIYCLAWSPAGDLLATGSNDKTVKLMAFNTHACNLEGQEVELTVHDGTVRDVCFIEDTTNKTSLLVSGGAGDCKIYVTDCIIGKTFQALSGHSGHVLSLYNWGGAMFVSGSQDKTVRFWDLRTGGCVNIISPPAGQPSKGSAVASLAVDPSGRLLVCGHDDGTCALHDVRGSRALQRFTPHSSDVRSVRFSPGAYYLLTAGYDGRVVLADLQGDLTCPLPSVPVARHPDKVISARWHPDDFSFLSTSADKTAVLWTIPPV

Uniprot

A0A2W1BLP4   A0A2A4K304   S4PY75   A0A1B6MQ85   A0A1Y1M3M6   A0A023F3P9   + More
A0A224XHQ9   A0A151WW74   A0A154PB14   A0A0C9RWF3   A0A3L8E494   A0A158P118   A0A1W4WWR8   A0A1W4WXT7   A0A1W4WM02   A0A0P4W4A4   A0A195D786   A0A0P5VMB2   A0A1B6H6H3   A0A1A8JW62   W5UFX1   A0A1A8EMU8   A0A0A0AJF0   A0A1A7ZJ05   A0A3B4FIT4   U3JJ52   A0A3P8WFN8   A0A1A8C8S3   A0A218UWG7   A0A1V4JYC8   A0A3P8NAW7   A0A3P9CRL7   H0Z240   A0A3P8WCP2   A0A1A8N9C1   A0A1A8MYR2   A0A1A8RM86   A0A3B5BD39   A0A091MJ88   A0A2I4CAL7   A0A3B4YPS8   A0A315VNK7   I3JV05   A0A3P8ST96   A0A3B3WL62   A0A2D0QHR5   K7FRZ2   A0A3L8SPR3   A0A1L8GNA4   G3SY85   I3JV06   A0A091HAC4   A0A2R8QD67   F7AQ74   A0A091EIS2   A0A1W5A9D7   E7F4B9   A0A1B6JYF3   A0A1L8GGQ7   A0A2D0QGD3   A0A2I0TYG4   A0A2D0QIL0  

Pubmed

28756777    23622113    28004739    25474469    30249741    21347285    + More
27129103    23127152    24487278    25186727    20360741    29703783    17381049    30282656    27762356    23594743    20431018   

EMBL

KZ150006    PZC75201.1    NWSH01000187    PCG78635.1    GAIX01003778    JAA88782.1    + More
GEBQ01003430    GEBQ01001870    JAT36547.1    JAT38107.1    GEZM01041418    JAV80422.1    GBBI01002687    JAC16025.1    GFTR01008314    JAW08112.1    KQ982691    KYQ52189.1    KQ434846    KZC08418.1    GBYB01013300    JAG83067.1    QOIP01000001    RLU27511.1    ADTU01005970    ADTU01005971    ADTU01005972    ADTU01005973    ADTU01005974    GDKW01000426    JAI56169.1    KQ976749    KYN08750.1    GDIP01098077    JAM05638.1    GECU01037444    JAS70262.1    HAED01008062    HAEE01004303    SBR24323.1    JT414872    AHH40790.1    HAEB01001963    HAEC01012366    SBQ48490.1    KL871737    KGL93165.1    HADY01003796    HAEJ01006768    SBP42281.1    AGTO01020758    HADZ01012058    SBP75999.1    MUZQ01000112    OWK57966.1    LSYS01005497    OPJ77220.1    ABQF01033746    ABQF01033747    ABQF01033748    ABQF01033749    ABQF01033750    ABQF01033751    ABQF01033752    ABQF01033753    HAEG01001513    SBR65432.1    HAEF01020824    SBR61983.1    HAEH01002823    HAEI01009095    SBS06817.1    KK827356    KFP73797.1    NHOQ01001318    PWA25122.1    AERX01001172    AERX01001173    AGCU01149944    AGCU01149945    AGCU01149946    QUSF01000010    RLW05996.1    CM004472    OCT85299.1    KL527327    KFO91630.1    CU179700    AAMC01009303    AAMC01009304    AAMC01009305    KK718445    KFO56512.1    BX005331    BX927108    GECU01003487    JAT04220.1    CM004473    OCT82966.1    KZ506648    PKU38812.1   

Proteomes

UP000218220    UP000075809    UP000076502    UP000279307    UP000005205    UP000192223    + More
UP000078542    UP000221080    UP000053858    UP000261460    UP000016665    UP000265120    UP000197619    UP000190648    UP000265100    UP000265160    UP000007754    UP000261400    UP000192220    UP000261360    UP000005207    UP000265080    UP000261480    UP000007267    UP000276834    UP000186698    UP000007646    UP000000437    UP000008143    UP000052976    UP000192224   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR006595   CTLH_C       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040067   WDR47       
IPR006594   LisH       
IPR024977   Apc4_WD40_dom       
IPR019775   WD40_repeat_CS       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2W1BLP4   A0A2A4K304   S4PY75   A0A1B6MQ85   A0A1Y1M3M6   A0A023F3P9   + More
A0A224XHQ9   A0A151WW74   A0A154PB14   A0A0C9RWF3   A0A3L8E494   A0A158P118   A0A1W4WWR8   A0A1W4WXT7   A0A1W4WM02   A0A0P4W4A4   A0A195D786   A0A0P5VMB2   A0A1B6H6H3   A0A1A8JW62   W5UFX1   A0A1A8EMU8   A0A0A0AJF0   A0A1A7ZJ05   A0A3B4FIT4   U3JJ52   A0A3P8WFN8   A0A1A8C8S3   A0A218UWG7   A0A1V4JYC8   A0A3P8NAW7   A0A3P9CRL7   H0Z240   A0A3P8WCP2   A0A1A8N9C1   A0A1A8MYR2   A0A1A8RM86   A0A3B5BD39   A0A091MJ88   A0A2I4CAL7   A0A3B4YPS8   A0A315VNK7   I3JV05   A0A3P8ST96   A0A3B3WL62   A0A2D0QHR5   K7FRZ2   A0A3L8SPR3   A0A1L8GNA4   G3SY85   I3JV06   A0A091HAC4   A0A2R8QD67   F7AQ74   A0A091EIS2   A0A1W5A9D7   E7F4B9   A0A1B6JYF3   A0A1L8GGQ7   A0A2D0QGD3   A0A2I0TYG4   A0A2D0QIL0  

PDB

5MZH     E-value=1.74587e-22,     Score=265

KEGG

101744420    no KO assigned | (RefSeq) WD repeat-containing protein 47

GO

GO:0005515   GO:0009253   GO:0008270   GO:0005524   GO:0005622   GO:0030145   GO:0006508   GO:0007169   GO:0016021  

PANTHER

PTHR19863  

Length:

902

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00928

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1  -  902

 

 

Pi

2.787186

Theta

21.760609

Tajima's D

-2.450427

CLR

0.154048

CSRT

0.00129993500324984

Interpretation

Possibly Positive selection