SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00206
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.149
 

Sequence

CDS
ATGGAGAAAAGTATGGAAATTCTATTGGCAAAATTAGATGAAAAGTTAGACCAACAAACTAAACTTATAACAACTACAGTAACACAAAATGTCATGGCAGCACTAGACGAAAAGTTTAAAGCGATCACCGAAGAAAATACCCAACTCAAAAATAAAATCAGTGAGCTAGAGTTAAAATTGAAATTCGCTGATAAGGATAAGCGCAAAAATAACCTTGTCTTTTTTGGCATCGAGGAAGGAAAAGCAACAACAGAAACGGAGCTAGTAGACTATATAAAAGACATTATACTGGAAATGGGAGTACATTTTGAAACCTTCGAAATTAATAATACTTACAGGATCGGTAAAAAAGAGCTCGATAAAAATCGCCCTGTTGTAGTCTCACTCACAACTACATGGAAAAAACACATGATTCTGCGAAATAGACGTAATCTACAAGAAGGTATAAATATCAAAGAGGACTACCCTAAAGAAATAATAGAAAAACGTAAACAACTACAGCGGCAAGTTGAAGAGGAAAAGAACAAAGGGAATATAGCGTTCATCAAATACGACAAACTGATAATAAAGAAAACACATGAAAGCAACAGAGAAAAGAGGAAAAGAGAGACTTCAAGATCACCGAAAACACCATCACAAAAGAAAACAAAACAAGATAAAAAGAACACCGAACATAAAAATATACATGTCTGTACACTGAATACTCGGACACTAAGAACGGAAGAGAGCCTAAAAGAATTAGAAATAGCCATATCCAACATAAAATGGGACATAATAGGCATCAGCGAGATGAGAAGGCCAGGAGAAGGAATAGAAGAGAGGAACGACTATATCATGTTTCACAAAGGAGAACACACCGGACAAAAAGGAGTAGGCTTCCTTATTAAGTCTAGGCTAAAGAAAAACATTATGGGTTTTGAAGGAGTATCTGACAGAATTGCGGTAGCTCATTTTAAATTTCCGGAATACAAGAAAAAATGGGCCATCTTCCAAATATATGCCCCAACAGAACAAGCAGGGATATCAGACATAGAATATTTTTATGAGAGTATCTCAGAAGCAATAAAACCGCACTACAATAACAATATAATAATCATGGGCGACTTTAACGCACAGGTTGGAGAAAGACAAAATGGAGAAGAATCCACAATCGGGAAGTTTGGACATGGCAAAAGAAGCCAAAATGGACAGAAACTAGTAGAGTTCATGATGGAAAATAACCTTATTTTAATGAACTCACGTTTTCACAAAAAGACTAAAAGCAAATGGACGTGGTCCTCCCCAGGTGCAAAATTCAAAACTGAAATAGACTTTATTATAACTAACAAAGCAAGCGCGTTCACAGATACCAACATAGTTAAAAACCTTAACTTTAACACAGACCACCGTATGGTGAGAAGCTGCCTAAGCTTAAACCAATCTAAAAGATCCAGGAAAAACCTAGCAAATAATAATAAGCTGTGTCAAATGTCAGAATACAGTCATTCCATTAATTCTCCCAAAACAGAATCACTCAAAGAAATTATTGCTTCCGACGCAGAAACTGGGATTAAATACAGAAGATTACAAAACAAATTGAAAGAGATGCTAGTCAGCAAACCTAAGAGCAAAGAAAGCTATTTAAGCAAGGAGACACTAGAACTATTGGATAAAAGAAGAACACTAATATCAAATAAAGGGGATAAAGAAAGACGCCAAAAAATTGCAAACCTTAGCAAGAAAATTAAGGAGAATATAAGAAAAGACCGTAGAGAGAAAAGAAATAGTGTTTTAGAAGAAAATATAAAAAGAACAGGAGGAACAAAAAAGGCTCTGAAGCAACTAAGCGAACACGGGAAAGAATGGATATTGAAACTGAACCAACGCGAATCTAACTTAATTAACCGACTCTCAATACTGAAACTAGCCACGGACTATTACCGCCTATTGTATTCTGATAAATTAGGTTCAGGGTTGGACACAATTCCGGAAGTTTACGAAGCAAATGAAAACAAAGTAGACAAAGTGCCAGAGATTCTTGCCTCAGAGGTAACCAAGGCAATAAAATCCCAAAAACTCGAGAAAGCTCCAGGGCCGGACAAGATACCTAACGAAATGCTTAAGGGAACTTTAGAGGAAATCAGTCCTGTGCTGGCAAAACTCTTCAATGAAATCTTAAAAACAAGGCAAATCCCAGAAGAATGGACCGAGTGTCACATAATTTTACTACATAAAAAAGGCACTAGAGACGAGATTGGGAACTATAGGCCAATTTCTCTAATATCAAACATATATAAAGTATTTGCTAAAGTGATCCTGGAAAGAATATCATTAACGCTAAACGAAAGCCAACCCGCAGAGCAGGCAGGATTCAGAAAAGGCTTCAGCACAATCGATCATATTCATACAATAAAACAGTTGATACAGAAGTATAATGAATACAATAAACAAATATACTTGGCGTTCATAGATTACTCAAAGGCATTCGATAGCCTCAGGCACCAATACATATGGCGGAGTCTTGAACAACAAGGAGTCCAGAGCAACTATATAGAAATACTCAAGAGTATATATAAATCTAGCAAGGCCAGTATCAAACTTGAATCAACAGGAGAGTCATTTCCTATCAAAAAGGGTGTACGCCAAGGCGATCCTCTCTCCCCTACACTATTTAACGCCGTACTCGAGCACATCTTTAGACAGCTAAACTGGGACCACTTAGGTCTAAATATAAATGGAGCTCGCCTAAACCACCTAAGATTTGCCGATGATCTGGTGCTTCTTGAAGAGAATCCTGCGGCAATAGAACTAATGATGCAGAGCCTAGCCAATATAAGTAGGGAAGCTGGTCTGGAAATCAATGGCAGAAAAACAAAATTGATGACAAACTCAAGGGAAATAGACGTTATGGTAGATGGCATCAAGATCGAATATGTCAAAGAATATAATTACTTAGGCCAGATTATATCCCCTTCAGATGTAATGACCAAGGAAATAACCAGGCGAATAGCCCAAGGTTGGAGAAAATACTGGTCACTGAAGGAAATAGTGAAAAGTAAGGATCTAGGCAATCACATCAAAAAGAAAACATTCGAGACCTGTATTCTACCAGTTCTTACTTATGGCTGCGAAACTTGGTCAATGACACTTAACCACAGGGAAAAGCTAATAAAATGCCAACGTGCCATGGAAAGAAGCATGCTAGGGTTAAAAATCAAAGATAGAGTTAGGAACGTAGACATAAGAACAAGAACGAAACTCACAGACATTCTCACCCGGATAGACGTCCAAAAATGGAGATGGGCTGGGCATATGCTACGCCACCCCATTAACAAATGGAGCAAGCAAGTCACCCTCTGGCAACCAAGAGACGGCAAACGAAGTAGGGGTCGTCAAATCAGGAGATGGGAAGATGACTTGAAGCAGACAGCGGGACCATTCTGGCTGAGAGTAGCAAGGGATAGGACCCATTGGAAGGAATTGGAGGAGGCCTATGCCAAAAGGCACACCGAACTTAGGGACCTCTTGTAA
Protein
MEKSMEILLAKLDEKLDQQTKLITTTVTQNVMAALDEKFKAITEENTQLKNKISELELKLKFADKDKRKNNLVFFGIEEGKATTETELVDYIKDIILEMGVHFETFEINNTYRIGKKELDKNRPVVVSLTTTWKKHMILRNRRNLQEGINIKEDYPKEIIEKRKQLQRQVEEEKNKGNIAFIKYDKLIIKKTHESNREKRKRETSRSPKTPSQKKTKQDKKNTEHKNIHVCTLNTRTLRTEESLKELEIAISNIKWDIIGISEMRRPGEGIEERNDYIMFHKGEHTGQKGVGFLIKSRLKKNIMGFEGVSDRIAVAHFKFPEYKKKWAIFQIYAPTEQAGISDIEYFYESISEAIKPHYNNNIIIMGDFNAQVGERQNGEESTIGKFGHGKRSQNGQKLVEFMMENNLILMNSRFHKKTKSKWTWSSPGAKFKTEIDFIITNKASAFTDTNIVKNLNFNTDHRMVRSCLSLNQSKRSRKNLANNNKLCQMSEYSHSINSPKTESLKEIIASDAETGIKYRRLQNKLKEMLVSKPKSKESYLSKETLELLDKRRTLISNKGDKERRQKIANLSKKIKENIRKDRREKRNSVLEENIKRTGGTKKALKQLSEHGKEWILKLNQRESNLINRLSILKLATDYYRLLYSDKLGSGLDTIPEVYEANENKVDKVPEILASEVTKAIKSQKLEKAPGPDKIPNEMLKGTLEEISPVLAKLFNEILKTRQIPEEWTECHIILLHKKGTRDEIGNYRPISLISNIYKVFAKVILERISLTLNESQPAEQAGFRKGFSTIDHIHTIKQLIQKYNEYNKQIYLAFIDYSKAFDSLRHQYIWRSLEQQGVQSNYIEILKSIYKSSKASIKLESTGESFPIKKGVRQGDPLSPTLFNAVLEHIFRQLNWDHLGLNINGARLNHLRFADDLVLLEENPAAIELMMQSLANISREAGLEINGRKTKLMTNSREIDVMVDGIKIEYVKEYNYLGQIISPSDVMTKEITRRIAQGWRKYWSLKEIVKSKDLGNHIKKKTFETCILPVLTYGCETWSMTLNHREKLIKCQRAMERSMLGLKIKDRVRNVDIRTRTKLTDILTRIDVQKWRWAGHMLRHPINKWSKQVTLWQPRDGKRSRGRQIRRWEDDLKQTAGPFWLRVARDRTHWKELEEAYAKRHTELRDLL

Summary

EMBL
FJ265564    ADI61832.1    FJ265561    ADI61829.1    ODYU01008249    SOQ51673.1    + More
FJ265563    ADI61831.1    GBBI01004876    JAC13836.1    FJ265562    ADI61830.1    KZ149907    PZC78256.1    GBGD01000380    JAC88509.1    FJ265542    ADI61810.1    ODYU01004088    SOQ43598.1    FJ265549    ADI61817.1    FJ265550    ADI61818.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    FJ265551    ADI61819.1    FJ265545    ADI61813.1    JARK01001655    EYB84321.1    GL379822    EGT48339.1    JARK01001473    EYB97806.1    JARK01001348    EYC25050.1    EYC25048.1    JARK01000173    EYC41342.1    EYC25049.1    JARK01001565    EYB89683.1    JARK01000388    EYC37469.1    JARK01001612    EYB86585.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    EYC25046.1    JARK01001407    EYC07212.1    JARK01001370    EYC16150.1    JARK01001337    EYC34625.1    JARK01000109    EYC42952.1    JARK01001531    EYB92324.1    JARK01001338    EYC33297.1    JARK01000302    EYC38674.1    GBBI01004877    JAC13835.1    JARK01001432    EYC03125.1    JARK01001353    EYC22263.1    JARK01000063    EYC44387.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001340    EYC30744.1    JARK01001497    EYB95322.1    JARK01001344    EYC28216.1    JARK01001389    EYC10874.1    JARK01001372    EYC15614.1    JARK01001475    EYB97550.1    JARK01001581    EYB88505.1    JARK01001401    EYC08686.1    JARK01001582    EYB88498.1    JARK01001346    EYC26445.1    GDKW01001596    JAI54999.1    JARK01001421    EYC04912.1    JARK01001500    EYB95049.1    JARK01000008    EYC46079.1    JARK01000161    EYC41641.1    JARK01001357    EYC20551.1    JARK01001618    EYB86258.1    JARK01000146    EYC42042.1    JARK01001736    JARK01001462    JARK01001379    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000177    EYC41209.1    EYC41210.1    JARK01000132    EYC42415.1    JARK01001388    EYC11165.1    EYC16376.1    JARK01001637    EYB85284.1    JARK01001524    EYB92970.1    EYC30828.1    EYB85282.1    JARK01000460    EYC36749.1    DS268591    EFO92565.1    EYB85285.1    JARK01001626    EYB85833.1    DS268444    EFP01729.1    EYB86257.1    EYB86256.1    JARK01001428    EYC03684.1    JARK01001621    EYB86109.1    JARK01000030    EYC45382.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF00069   Pkinase
PF00201   UDPGT
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR029052   Metallo-depent_PP-like       
IPR017441   Protein_kinase_ATP_BS       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
IPR002213   UDP_glucos_trans       
IPR017452   GPCR_Rhodpsn_7TM       
IPR036423   SOD-like_Cu/Zn_dom_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF56112   SSF56112       
SSF49329   SSF49329       
Gene 3D

Ontologies

Topology

Length:
1169
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00134
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1169
 
 

Population Genetic Test Statistics

Pi
0.032513
Theta
0.409885
Tajima's D
-1.838084
CLR
0.36311
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号