Silkworm Genome Informatics Database

Gene

KWMTBOMO00205

Pre Gene Modal

BGIBMGA000584

Annotation

PREDICTED:_peptidoglycan-recognition_protein_LF-like_[Papilio_xuthus]

Location

Bomo_Chr1(-):6402929-6416160 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.496

CDS

ATGTATTCTGTTGTTAGTTTAAAAATTGCCAGAAATTATGGTTTTGTTTTAGGCCAAATACTCGGTCAGGAGCTGATATCATCTAAGAGCACACGCAAACTCCGCTGTAGTATCGCCGTGTTTGTTTGCTGGACGCTCATTGTCACATTAGGACTGGGCTTCTACATATCCCACTACGCGCTATCCAAGCTCACACGTCTCGATCTAGATATACACGAGCCCTGGTATCTTCGTCGAAGTGACTGGCAAGCGATGTCGCCATACTCAGTGGATTTCCTCGATTTACCCCTATCCTTCGTCATAGTTGGTCACAGCGCTACCAACTACTGTACTGAAAAGTACGAATGTATTAAGGAAATGTTGGATGTGCAGAAAAGCCATTTGCATCGCGGATGGCAAGATATCGGTCCCAATTTCCTCGTGTCTGGTAACGGCATCGTATTCGAAGGCAGAGGCGCTAATGTGTTCGGTGCAATGGCGATAGCTTGGAACCGCAGAAGCATACTAATCATGTTCCTCGGGGATTATACAAAGGATAAGACGACACCTGTACAGTTTGAACACTTAAATATCGTCTTAGATCAACTTGTAAAACAAGGAGTCTTGCGACCTGATTACACTTTGTATGGCCAATGCCAGGTAGCGTCGCTCACTATAAGTCCTGGACCTAACGTTATACAACTTCCACTGCCGCGCTTCATATGGAAAGTGTTGAAGAATACAAGTAGAGTGGAAAGATCGCTATGTGCTGCTGCTGTTTCAGCTTTAATCATATGTATAGCGTTGACACTTTACTTCACACTGTCAGCCAAGGCGACCACTGACGACGATGTTGCACCTCACCCATGGAACATCTCTAGAGATATGTGGCTGGCCAAGAAGTACAATGGGTCAGAAGCAATTACACAGTTTGTGCCGTTGCGACTGGTCATCGTCCAACACACGGTGAGCGCGAAATGCTCCAACTTTATCACGTGTGCGGCCGAAGTCCGGATCATCCAAACGTTTTATTTGGAAAAACAAAAATATGACATTCCTTACAATTTCATAATTGGCAACGACAATAGAGTTTATGAAGGACGCGGTTGGGGCATTATGGGAGCACATACTTTATCTTATAATAGCTGTTCGGTCGGTGTGGCTTTTATAGGTGATTACCGCGAGCTGGAAGCCACAGATCTTCAGATTAATAGAACACAGATGTTACTTGACGACGGCGTAAGAAGGGGTTTCCTACATCCCGATTACTATATTGTTGGTGCTTGTGATATCCGTGAAACAGTCAGTCCGGGAATCAACCTGTATAATGCCTTAAAAAAATTGAAGCATTTTGATCACAGCGGACGTTTCAAACACAAAACTTGTACGCAAATCTATGCAATGATCGAAAGTGAAAACTAA

Protein

MYSVVSLKIARNYGFVLGQILGQELISSKSTRKLRCSIAVFVCWTLIVTLGLGFYISHYALSKLTRLDLDIHEPWYLRRSDWQAMSPYSVDFLDLPLSFVIVGHSATNYCTEKYECIKEMLDVQKSHLHRGWQDIGPNFLVSGNGIVFEGRGANVFGAMAIAWNRRSILIMFLGDYTKDKTTPVQFEHLNIVLDQLVKQGVLRPDYTLYGQCQVASLTISPGPNVIQLPLPRFIWKVLKNTSRVERSLCAAAVSALIICIALTLYFTLSAKATTDDDVAPHPWNISRDMWLAKKYNGSEAITQFVPLRLVIVQHTVSAKCSNFITCAAEVRIIQTFYLEKQKYDIPYNFIIGNDNRVYEGRGWGIMGAHTLSYNSCSVGVAFIGDYRELEATDLQINRTQMLLDDGVRRGFLHPDYYIVGACDIRETVSPGINLYNALKKLKHFDHSGRFKHKTCTQIYAMIESEN

Uniprot

A0A194QV31 A0A212FME6 A0A0L7KSP7 A0A1E1W8A1 A0A1E1WHF8 A0A1E1W0Z8 + More
A0A212FMI9 A0A384CHF7 F7BEB8 A0A194Q0S5 G3VZF9 G3VZG0 V5GPC8 I3M599 A0A3L7IGL9 A0A337SE72 M3VYL0 A0A061IM12 A0A1U7R3J3 A0A0G2QC26 G3I8A6 D3ZYV3 F8WK49 A0A2U3WZ34

Pubmed

26354079 22118469 26227816 19892987 21709235 29704459 + More
17975172 23929341 15057822 21804562 21665294

EMBL

KQ461108 KPJ09174.1 AGBW02007654 OWR54870.1 JTDY01006104 KOB66282.1 + More
GDQN01007870 JAT83184.1 GDQN01004611 JAT86443.1 GDQN01010384 GDQN01002099 JAT80670.1 JAT88955.1 AGBW02007651 OWR54947.1 KQ459582 KPI98913.1 AEFK01161767 AEFK01161768 AEFK01161769 AEFK01161770 GALX01005044 JAB63422.1 AGTP01066417 RAZU01000055 RLQ77309.1 AANG04004008 KE663882 ERE90694.1 AABR07012289 JH001491 EGW10419.1 AABR07012273 AABR07012274 AB295597 BAK61786.2

Proteomes

UP000053240 UP000007151 UP000037510 UP000261680 UP000002281 UP000053268 + More
UP000007648 UP000005215 UP000273346 UP000011712 UP000030759 UP000189706 UP000002494 UP000001075 UP000245340

PRIDE

G3I8A6 D3ZYV3

Pfam

PF01510 Amidase_2

Interpro

IPR002502   Amidase_domain        + More
IPR006619   PGRP_domain_met/bac
IPR015510   PGRP
IPR036505   Amidase/PGRP_sf

SUPFAM

SSF55846 SSF55846

Gene 3D

3.40.80.10

CDD

cd06583 PGRP

ProteinModelPortal

A0A194QV31 A0A212FME6 A0A0L7KSP7 A0A1E1W8A1 A0A1E1WHF8 A0A1E1W0Z8 + More
A0A212FMI9 A0A384CHF7 F7BEB8 A0A194Q0S5 G3VZF9 G3VZG0 V5GPC8 I3M599 A0A3L7IGL9 A0A337SE72 M3VYL0 A0A061IM12 A0A1U7R3J3 A0A0G2QC26 G3I8A6 D3ZYV3 F8WK49 A0A2U3WZ34

PDB

1SXR E-value=5.3284e-28, Score=310

KEGG

101739885 K01446 peptidoglycan recognition protein | (RefSeq) peptidoglycan-recognition protein SC2-like

GO

GO:0016021 GO:0008270 GO:0008745 GO:0009253 GO:0051714 GO:0061844 GO:0042834 GO:0032689 GO:0032827 GO:0050830 GO:0019730 GO:0016045 GO:0032991 GO:0031640 GO:0005615 GO:0016019 GO:0046982 GO:0044117 GO:0005524 GO:0005622 GO:0030145 GO:0006508 GO:0007169

PANTHER

PTHR11022

Length:

466

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

57.84489

Exp number, first 60 AAs:

22.28271

Total prob of N-in:

0.82946

POSSIBLE N-term signal

sequence

inside

1 - 37

TMhelix

38 - 60

outside

61 - 466

Pi

0.289123

Theta

11.910197

Tajima's D

-2.2225

CLR

0.672519

CSRT

0.00469976501174941

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics