Gene

KWMTBOMO00203

Pre Gene Modal

BGIBMGA000629

Annotation

PREDICTED:_cold_shock_domain-containing_protein_E1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr1(+):6341653-6357879      View in EpiBrowser

Transcription factor

CSD

Location in the cell

Nuclear   Reliability : 2.674

CDS

ATGCAGCACAAATCTTCGTATCGTAATGGTACCTACAGCAGTGAGTACCCAAGTTCTCCTCGGGATAATTATAATGGTGGTTCCAAATCAAGTGGTGGAAACCGATTCTCAGGTGGATACAATGCTGATGGATGTCCAATGGGTGACTCAGCATATTCATCTTCTTCAACCAATAACAGTTCATCCCAATATGACTCAGTCAATCACCCACCTATTAGAGAGACCGGCATTATTGAAAAACTTCTCCATTCTTATGGTTTCATACAATGCTGTGAGAGGCAAGCCCGTCTTTTTTTCCACTTCAGTCAGTTCAGTGGTAATACTGAACATCTTAAAATAGGTGACCCTGTGGAATTTGAAATGACTTATGATCGTCGAACAGGCAAACCAATTGCATCAACAGTCACTAAAATTGCACCGGAAGTGGTATTAAGCGAAGCTAGAGTCACAGGCACTGTAACAACAGAAGTAAAAGGTGAAGGATCTGGTGATAATACAGGTAGAATATCCTATGAAACTCGTGGAGAATGTTTCTTCTTGCCCTATACAAAAGATGATGTTGAAGGGAATGTCACTTTACGCACTGGAGATGCTGTCAGCTTTCAAATTGCAACTAATCAAAGAGGAACATTAGGTGCTTGTCATATACGTTTTGAGAACCCCGTACATCCAGTTAAATATCATGGAGTTGTCTGCTCCATGAAAGAAAATTTTGGTTTTATTGAACGTGCCGATGTTGTAAAAGAGATATTCTTTCATTTTTCTGAAACTAAATGTAAAGAAGAATTGACTCTCGGTGATGATGTCGAGTTTATTATACAAACTAGAAATGGCAAAGAAGTGGCATGTAACATTACTAAGTTACCAAGTGGTTCAGTTGTGTTTGAAGATGTAAGTCCTGAAATAATGCGTGGTCAGGTGTTGAAGCCTTTGGAACGCGGTAACTTGGTGCGTGCAACACAGAACGATCCTCTCCCTGGGCGCATCCGATACCGTGCTGCAGATCATTCTGAAGTTGAGGTCCCCTTTGGAGATAAAGACCAGTGTGGTGAGTTTACGCTCCGACACGGAGATTGGGTGCAGTTTCAAGTTGCAACCGATCGTCGTGATCAGCTCAAGCGCGCCACTAATATTTCTCTCCTCGATGAATCTTTTTATGTATCTGGCGAACGGCGGGAGCAAGGCCTCGTGTGCTCTCTGCGGGAAGGGTTCGGATTCATCCGTTGCGTGGAAAGAGAACAGACTATGTTCTTTCATTTCGCCGAGGTTCTTCGCTTAGGACAAGATCTCACCGTTGGAGATGAGGTGGAGTTTACCGTTGACCATTTATCGACATTCTCGAACATGAACACGCGGCAATCAGCTATTCGCATCAAGCATCTCTCGCCGGGCACGGTTCAGTTCGAGACTCTGATCGAGCGCGGCGTCAGAGGTGTTGTGACCAAGGAAGCTCAAGTGTACAACAACACCGGCAGTCCGACCCGACAGCCTCCACCGGATACAAATGGACTAATCTCTTGTCAGATTAATCAGACTAAGAAATCTCTGCCTTTTATGGCCAAAAAATGCGAATCAAAAATGCTACCCCGTGTTGGAGACAAGGTCACCTTCGACTTATACCAGGTTAAACGCACAAAGGAGCTTGTAGCGATGTCAGTACAAGTCCAACACAGTCTTACAAACGGCAACTCGAGTAATGGAAACGGCAGCCGTCCCATCATGCAAGGTTTCATAGCTGCTCTGAAAGATGGATTTGGTTTTATTGAAACATCAGATCACACCAAAGAAGTGTTTTTCCACTTCAGTAATTTGGAAGGTAGCCCGGAAAATTTGGAATTGGGCATCGAAGTCGAGTATAGTTTGGGTCGCCTGAACGGCTCTGGCGGGGGCTGTGCAAGCGCTGAATACGTCCGTGTTTTGGCTCGAGGTACTATACCTATTGCGAAGCCGCTAGAACCAACTCTAAATGGAACTGTGACGAGAACCTTACGGGCTCTGAACCCTGATCAAGCCCAATATTCCGGTTTGATTCAAGTGGAAGGTGGGACAAGCTATGAGTTTGGCATTATGGGATTATCATGCAAGCGTGAGATTCTGCAGGTTGGTGATCCAGTAACTTTTCAAGCTGACATAGAGGGACGGGCCAGTAACATAGTGCCAATTAGAAAGAAGCGACGTGCCATTGTTGACGCCATAAAAGGTGTTTTTGGCTTTTTGTCTGTCGACGGCGAAGATACTCGTCGTTTGTTCTTCCACATGTCTGAGGTTCGAGGTAATCCCTCCGAGTTGCAGTCGGGGGATACTGTTGAGTTCGTGATGCTTACTAATCCTCGTAATGGGAAGTCTTCTGCTTGCAATGTCGTTAAAATAGCGAGCAAGGGTAAAGTGAGAAGTGAACGTCCAGAGCGGCTTCTCTCTCGGCTCCGGACGGCTTCGTTGGAGGAGTCGGCAGGGCCTCGAGTGATTGCTGTGCGCACTCCACGCGGCCCCGACGGATCGAGAGGCTTCCGTCCGCGTCGTCCCATCGCAGAATTGTTGGCCGAGTGA

Protein

MQHKSSYRNGTYSSEYPSSPRDNYNGGSKSSGGNRFSGGYNADGCPMGDSAYSSSSTNNSSSQYDSVNHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYETRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHIRFENPVHPVKYHGVVCSMKENFGFIERADVVKEIFFHFSETKCKEELTLGDDVEFIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNLVRATQNDPLPGRIRYRAADHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRATNISLLDESFYVSGERREQGLVCSLREGFGFIRCVEREQTMFFHFAEVLRLGQDLTVGDEVEFTVDHLSTFSNMNTRQSAIRIKHLSPGTVQFETLIERGVRGVVTKEAQVYNNTGSPTRQPPPDTNGLISCQINQTKKSLPFMAKKCESKMLPRVGDKVTFDLYQVKRTKELVAMSVQVQHSLTNGNSSNGNGSRPIMQGFIAALKDGFGFIETSDHTKEVFFHFSNLEGSPENLELGIEVEYSLGRLNGSGGGCASAEYVRVLARGTIPIAKPLEPTLNGTVTRTLRALNPDQAQYSGLIQVEGGTSYEFGIMGLSCKREILQVGDPVTFQADIEGRASNIVPIRKKRRAIVDAIKGVFGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVVKIASKGKVRSERPERLLSRLRTASLEESAGPRVIAVRTPRGPDGSRGFRPRRPIAELLAE

Uniprot

H9ITP9   A0A2A4K2Z6   A0A2H1V2L2   A0A2W1BK01   A0A194QW32   A0A194PSC5   + More
A0A212FMB5   A0A1Y1KE24   D6WHZ1   A0A067RAW6   A0A2J7QNT2   A0A2J7QNT1   V5I8Z2   A0A0T6BBU1   A0A1W4XT22   A0A1W4XU37   A0A232EXJ2   K7IMD5   A0A0C9R4D0   A0A1B6JQ41   E2ASR3   A0A0J7KND8   A0A2A3EKM4   A0A087ZZD3   A0A195BDE4   A0A158NFF1   A0A026WHS7   A0A1L8E1P0   A0A195DAK9   A0A1L8E150   A0A1L8E1A9   E2B5T4   A0A195FRJ8   A0A151XFI0   F4WGX0   A0A151IHR5   E9IGH2   U5EZU1   E0VEC6   A0A069DY03   A0A224XAN5   A0A0V0G417   A0A0K8TKU2   A0A336KE23   A0A023F387   T1HMA0   A0A2M4A5V5   A0A2M4A614   A0A2S2PEL4   W5J6A3   A0A1Q3F4B6   A0A2M4BCF5   A0A2H8TYQ1   A0A1Q3F4B7   A0A2M3YYX3   J9JRC1   A0A2M4A6N7   A0A182FLA0   A0A084WCY7   N6TP73   A0A182QFF3   A0A0M4F141   E9FQW3   A0A0M4EY92   A0A0P5ZD89   A0A0P5PIS4   A0A165A4R9   A0A2P8YW30   A0A0P6B6B1   V9ILB5   A0A0P6I5H1   A0A0P5VIM8   A0A1B6MI88   A0A2S2Q4W6   A0A182TYS4   A0A2D5MCN6   A0A2D5MMM3   A0A0K2T761   A0A0P4ZQW5   A0A0P5UGX2   A0A0P5W5S4  

Pubmed

19121390    28756777    26354079    22118469    28004739    18362917    + More
19820115    24845553    28648823    20075255    20798317    21347285    24508170    30249741    21719571    21282665    20566863    26334808    26369729    25474469    20920257    23761445    24438588    23537049    21292972    29403074    29337314   

EMBL

BABH01006770    NWSH01000187    PCG78631.1    ODYU01000384    SOQ35080.1    KZ150006    + More
PZC75208.1    KQ461108    KPJ09175.1    KQ459594    KPI96212.1    AGBW02007654    OWR54871.1    GEZM01086189    JAV59689.1    KQ971331    EEZ99711.1    KK852630    KDR19871.1    NEVH01012562    PNF30245.1    PNF30244.1    GALX01003840    JAB64626.1    LJIG01002565    KRT84375.1    NNAY01001740    OXU23065.1    GBYB01002745    JAG72512.1    GECU01006396    JAT01311.1    GL442346    EFN63545.1    LBMM01005021    KMQ91893.1    KZ288230    PBC31581.1    KQ976514    KYM82229.1    ADTU01014382    KK107199    QOIP01000009    EZA55553.1    RLU18488.1    GFDF01001659    JAV12425.1    KQ981063    KYN09923.1    GFDF01001657    JAV12427.1    GFDF01001658    JAV12426.1    GL445887    EFN88903.1    KQ981340    KYN42534.1    KQ982182    KYQ59152.1    GL888147    EGI66589.1    KQ977578    KYN01815.1    GL763048    EFZ20294.1    GANO01000148    JAB59723.1    DS235090    EEB11732.1    GBGD01000287    JAC88602.1    GFTR01008432    JAW07994.1    GECL01003323    JAP02801.1    GDAI01002830    JAI14773.1    UFQS01000259    UFQT01000259    SSX02142.1    SSX22519.1    GBBI01003071    JAC15641.1    ACPB03009072    GGFK01002838    MBW36159.1    GGFK01002747    MBW36068.1    GGMR01014467    GGMR01015019    MBY27086.1    MBY27638.1    ADMH02002077    ETN59531.1    GFDL01012641    JAV22404.1    GGFJ01001566    MBW50707.1    GFXV01007638    MBW19443.1    GFDL01012644    JAV22401.1    GGFM01000705    MBW21456.1    ABLF02033793    GGFK01003136    MBW36457.1    ATLV01022899    KE525337    KFB48081.1    APGK01057726    KB741280    KB632170    ENN71025.1    ERL89522.1    AXCN02000980    CP012525    ALC44570.1    GL732523    EFX90058.1    ALC43437.1    GDIP01045653    JAM58062.1    GDIQ01133479    JAL18247.1    LRGB01000642    KZS17176.1    PYGN01000327    PSN48449.1    GDIP01019608    JAM84107.1    JR049753    AEY61064.1    GDIQ01011058    JAN83679.1    GDIP01099618    JAM04097.1    GEBQ01004372    JAT35605.1    GGMS01003438    MBY72641.1    NYWD01000066    MAD19933.1    NYWG01000035    MAD23401.1    HACA01003940    CDW21301.1    GDIP01210069    JAJ13333.1    GDIP01130230    JAL73484.1    GDIP01090833    GDIP01090832    JAM12883.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000007266    + More
UP000027135    UP000235965    UP000192223    UP000215335    UP000002358    UP000000311    UP000036403    UP000242457    UP000005203    UP000078540    UP000005205    UP000053097    UP000279307    UP000078492    UP000008237    UP000078541    UP000075809    UP000007755    UP000078542    UP000009046    UP000015103    UP000000673    UP000007819    UP000069272    UP000030765    UP000019118    UP000030742    UP000075886    UP000092553    UP000000305    UP000076858    UP000245037    UP000075902    UP000226652   

PRIDE

H9ITP9   

Pfam

PF00313   CSD        + More
PF12901   SUZ-C

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR019844   CSD_1       
IPR011129   CSD       
IPR024642   SUZ-C       
IPR002059   CSP_DNA-bd       

SUPFAM

SSF50249   SSF50249       

CDD

cd04458  CSP_CDS

ProteinModelPortal

H9ITP9   A0A2A4K2Z6   A0A2H1V2L2   A0A2W1BK01   A0A194QW32   A0A194PSC5   + More
A0A212FMB5   A0A1Y1KE24   D6WHZ1   A0A067RAW6   A0A2J7QNT2   A0A2J7QNT1   V5I8Z2   A0A0T6BBU1   A0A1W4XT22   A0A1W4XU37   A0A232EXJ2   K7IMD5   A0A0C9R4D0   A0A1B6JQ41   E2ASR3   A0A0J7KND8   A0A2A3EKM4   A0A087ZZD3   A0A195BDE4   A0A158NFF1   A0A026WHS7   A0A1L8E1P0   A0A195DAK9   A0A1L8E150   A0A1L8E1A9   E2B5T4   A0A195FRJ8   A0A151XFI0   F4WGX0   A0A151IHR5   E9IGH2   U5EZU1   E0VEC6   A0A069DY03   A0A224XAN5   A0A0V0G417   A0A0K8TKU2   A0A336KE23   A0A023F387   T1HMA0   A0A2M4A5V5   A0A2M4A614   A0A2S2PEL4   W5J6A3   A0A1Q3F4B6   A0A2M4BCF5   A0A2H8TYQ1   A0A1Q3F4B7   A0A2M3YYX3   J9JRC1   A0A2M4A6N7   A0A182FLA0   A0A084WCY7   N6TP73   A0A182QFF3   A0A0M4F141   E9FQW3   A0A0M4EY92   A0A0P5ZD89   A0A0P5PIS4   A0A165A4R9   A0A2P8YW30   A0A0P6B6B1   V9ILB5   A0A0P6I5H1   A0A0P5VIM8   A0A1B6MI88   A0A2S2Q4W6   A0A182TYS4   A0A2D5MCN6   A0A2D5MMM3   A0A0K2T761   A0A0P4ZQW5   A0A0P5UGX2   A0A0P5W5S4  

PDB

4QQB     E-value=5.21329e-32,     Score=347

KEGG

101743510    no KO assigned | (RefSeq) cold shock domain-containing protein E1

GO

GO:0003676   GO:0005737   GO:0003677   GO:0006355   GO:0005524   GO:0005622   GO:0030145   GO:0006508   GO:0007169   GO:0016021  

Subcellular location

Cytoplasm  

Length:

848

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00033

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00013

outside

1  -  848

 

 

Pi

0.32371

Theta

2.490987

Tajima's D

-2.303189

CLR

1.593433

CSRT

0.000849957502124894

Interpretation

Possibly Positive selection