SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00202
Annotation
PREDICTED:_uncharacterized_protein_LOC106126261_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 2.835
 

Sequence

CDS
ATGCCTGAAGCACAGGAGCCTAAATTCACTCGAGGCGAAAAATGTATTTTCATTCATTTAATAGTATCATTTTTCTTTATAATAATATTAATAATCATTTATTTTGTACATATATGCGTAGTGCAACACAGGCCCAACGAGTTATTCTGGATAACGCGCAGAACTAATAAAGAGTCGTTCCATAGAAACGAATCTTATTATCCTATTGGTTTCATTTATTTGAACAAGAATCCTCACAAAATCATGTGCAATGTAATATTGCTGCGGGTTCAATGGTCAGTGGCCCCAGCTCACTGCGCATCAATACGATCTGACCCAGATTTGGCTAATATGTTGGACTTGTGGCGTATTAAATACAAAACGAAAGACGATCGTTTCCTCGAACTAAAAGTAAAAAAAAGCATAATTCACTGGCAATTTAACAGAATAGATTTTCAAAACAACATTGGATTATTCCTGCATGAAAATGTCACGTCTATTATTCCGTACGATGTAACAACCATCAGTCCAATTTCACCAGACGTCCGAGATCATGGTCACGAACAAATGTTCTTAATAAATTGGGATGTAATATTTAATAATAAAAGTGAAAAGCGTAATGTTACTGCTGTATACCTCGTGACATCTGAAAAATGTTTGGATCATGTTTCACAAATAATCGACGAAAAAAGACAGTATGAATTTTGTGCAAAGCCTACTCATGGTATTGGCTATAAGCTTGGTTAG
Protein
MPEAQEPKFTRGEKCIFIHLIVSFFFIIILIIIYFVHICVVQHRPNELFWITRRTNKESFHRNESYYPIGFIYLNKNPHKIMCNVILLRVQWSVAPAHCASIRSDPDLANMLDLWRIKYKTKDDRFLELKVKKSIIHWQFNRIDFQNNIGLFLHENVTSIIPYDVTTISPISPDVRDHGHEQMFLINWDVIFNNKSEKRNVTAVYLVTSEKCLDHVSQIIDEKRQYEFCAKPTHGIGYKLG

Summary

Pfam
PF00089   Trypsin
Interpro
IPR001254   Trypsin_dom        + More
IPR009003   Peptidase_S1_PA       
SUPFAM
SSF50494   SSF50494       
PDB
1A5I     E-value=0.0425822,     Score=83

Ontologies

Topology

Length:
241
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.6267
Exp number, first 60 AAs:
22.56289
Total prob of N-in:
0.61700
POSSIBLE N-term signal
sequence
inside
1  -  15
TMhelix
16  -  38
outside
39  -  241
 
 

Population Genetic Test Statistics

Pi
23.874244
Theta
17.580875
Tajima's D
-0.683823
CLR
0.00678
CSRT
0.202889855507225
Interpretation
Uncertain
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