Silkworm Genome Informatics Database

Gene

KWMTBOMO00197 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000626

Annotation

PREDICTED:_exosome_component_10_[Amyelois_transitella]

Location

Bomo_Chr1(+):6204113-6214189 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.141

CDS

ATGAAGAATCAAATAATCGAGAAGAATGCTGGACAAACGAATATGCTACTGTCGGTCTTCGAGGACAGCCGTCAGACTTGCGCCTCTACATACAATAAAGAGGTGATTCACGACGAGAGCCACATACCATTATACATACGTTCGAAGAAGAATTTCGATAATCAGCAAATGGCGGCTCTTAAGATGCTCTACAAATGGAGAGACTCGCAGGCGCGGCAACTGGACGAAAGCACCACGTACCTTCTGCCGAACCACATGCTGCTGTCGCTCTCCGAGAATCTGCCGCGCGAGCTACAAGGCGTCAACGCTTGCTGCGATCCGATGCCGCCATTCGTCAAACAGAATGTGATAACCATCCATCGTATGATCTTATCGTGTCGCGAATTGCCGAAGGACGCTCAGATATTCCACATACCGTCCGGCATAAGGAACATGATGAACGCCGGGATAGAGCAAATACATTATGAAATGCACGACCTCGATCACGAAGCGGAATATCGCGAGGAACAGAAGTCGAATGTCGAACAAGTTAATTACTGTCTAACCGTCACCACCAAAATTACTTCGAAGTTTAATCCCGAAGTCGAGGCCTTTATACCGGCATCAATGATGTTTCCAGAAGGGACCATTGTATCCGCATTGAATGCTGACGCCGAAATGTTCGTTCCGCCGTATTCTAGATACGTGAACTACAGGACTCTTGCTCAGGAGGAAATAGCCAAAGATATCAAAGAAATGGAAGCCAAAGTGGCGGCCATCAGTCAGGGAAACGAGCTGATCGAGGAGGAGGTTCTGCAGAAGCTGCAAAAGGCGCAGTCGCACATCGAGCACGATAAGACGAGTGTCGCTCCTCAAGCCGCCGCCGCTAATGACACCGAGCCCGATACGAAAACGGCCCAACGGAAACGAAAAATCGTCACCGAAAACGCAGAGGAACAAAATGTAGGGCGGGCCCACAAAAACGAACATGTTCCGAAAAAAATAGATGTCGCGAAAAAGGAGGTCACCGCCGGTTACCAATACCAGAACGCGACCTACGACAAGTTCTACAACGTAACCAACAATACTAAGCAGATAAAGGGCAAAAAGTCGAAGAAACAAAACGTGAACGATTAA

Protein

MKNQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMILSCRELPKDAQIFHIPSGIRNMMNAGIEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIVSALNADAEMFVPPYSRYVNYRTLAQEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQNATYDKFYNVTNNTKQIKGKKSKKQNVND

Uniprot

H9ITP6 A0A2H1VWX8 A0A2A4J9R3 A0A2W1BRB1 A0A212EMN4 A0A1W4XHP4 + More
A0A1B6F5B3 A0A067QXE4 D6WNA2 E0VJL3 A0A0P4YSW2 L7MFU9 A0A1Y1KTY5 B4G6E8 Q29AI2 A0A1Y1KTQ2 V5H8Y9 A0A1A9XRD8 A0A224YSY7

Pubmed

19121390 28756777 22118469 24845553 18362917 19820115 + More
20566863 25576852 28004739 17994087 15632085 25765539 28797301

EMBL

BABH01006761 BABH01006762 BABH01006763 ODYU01004929 SOQ45308.1 NWSH01002247 + More
PCG68825.1 KZ150006 PZC75216.1 AGBW02013811 OWR42755.1 GECZ01024414 JAS45355.1 KK852902 KDR14061.1 KQ971342 EFA03774.2 DS235226 EEB13569.1 GDIP01223508 JAI99893.1 GACK01002896 JAA62138.1 GEZM01073848 JAV64784.1 CH479179 EDW23906.1 CM000070 EAL27368.1 GEZM01073849 JAV64782.1 GANP01015065 JAB69403.1 GFPF01007713 MAA18859.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000192223 UP000027135 UP000007266 + More
UP000009046 UP000008744 UP000001819 UP000092443

PRIDE

H9ITP6

Pfam

PF08066   PMC2NT        + More
PF00570   HRDC
PF01612   DNA_pol_A_exo1

Interpro

IPR012588   Exosome-assoc_fac_Rrp6_N        + More
IPR010997   HRDC-like_sf
IPR002121   HRDC_dom
IPR002562   3'-5'_exonuclease_dom
IPR012337   RNaseH-like_sf

SUPFAM

SSF53098 SSF53098 + More
SSF47819 SSF47819

ProteinModelPortal

H9ITP6 A0A2H1VWX8 A0A2A4J9R3 A0A2W1BRB1 A0A212EMN4 A0A1W4XHP4 + More
A0A1B6F5B3 A0A067QXE4 D6WNA2 E0VJL3 A0A0P4YSW2 L7MFU9 A0A1Y1KTY5 B4G6E8 Q29AI2 A0A1Y1KTQ2 V5H8Y9 A0A1A9XRD8 A0A224YSY7

PDB

3SAH E-value=2.27914e-27, Score=304

KEGG

100141462 K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] | (RefSeq) Pm-scl, BmPM-Scl; PM-Scl autoantige

PATHWAY

03018 RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0006396 GO:0000176 GO:0000166 GO:0003676 GO:0008408 GO:0007059 GO:0006378 GO:0005730 GO:0000278 GO:0005652 GO:0051607 GO:0010468 GO:0071027 GO:0003824 GO:0044237 GO:0005622 GO:0030145 GO:0006508 GO:0007169 GO:0016021

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00712

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06275

outside

1 - 371

Pi

0.341768

Theta

2.50006

Tajima's D

-2.152667

CLR

0.024298

CSRT

0.00364981750912454

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics