Gene

KWMTBOMO00195

Pre Gene Modal

BGIBMGA000589

Annotation

syntaxin_6_[Bombyx_mori]

Location

Bomo_Chr1(-):6178064-6184082      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.984

CDS

ATGATTATTGTAGAGAAGAACTCTTCAAAATTCAAGATTGACAACAAAGAAATTTGTGATAGACGAACCTTTATCGAAGCAACGAAGCAAGAAGTCAAGAACATGAAGAGCAAGATGAGCTTGAACCGCAATCGAGACAATGACGGAACCGCTCGGGAGCCTCTACTTGGTGACGATAGTCCAATGAACTTTGGCAACAATTGGACATCCACTCCGAAATACACTAAATATTCAAAACTAGCGAATCAAACCGACAGTCCCAATCGCTTCGATATTTATGACAATGATATTCTGTCTATGCAAGATAAGTTGTTGGGAAATCAGAATGAGCAGCTACAAGTTATTAGTGAGACGGTCGGTTCGCTCAAGACAGTTTCCAAGCAGATTGGTCTTGAACTCGACGAGCAAGCTGTAATGTTGGACGATTTGAATACGGATCTTGAAAACACAGATTCTAAATTAGATTCCACTCTTAAAAAAGTCGCGAAGCTGCTTCACATGAACAATGACCGACGACAATGGTTCGCTATAATGATTCTTGTGGGACTAATATTTTTAGTTTTACTGTTATTTATAATTCTTTAA

Protein

MIIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMKSKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQAVMLDDLNTDLENTDSKLDSTLKKVAKLLHMNNDRRQWFAIMILVGLIFLVLLLFIIL

Similarity

Belongs to the syntaxin family.

Uniprot

Q8MMJ8   Q8T0Z9   A0A2H1VWT2   A0A1E1W691   A0A194QUH9   A0A2A4JAN1   + More
A0A194PTX0   A0A2W1BPH4   A0A067RJI7   A0A0A9WJV0   A0A1Y1JWF2   A0A1B6F6K1   A0A1B6M580   A0A139WLW2   A0A0V0G678   A0A1B6C7E3   A0A0K8TS70   E0VWI1   A0A0T6B0E7   A0A1L8DVT4   A0A1L8DVR3   A0A1L8DVT7   A0A2A3E3H8   V9I9E9   V9I8X9   E2BNR0   A0A154PLL2   F4X4M9   V9I7K5   V9I9E4   V9I7P4   B4QB35   B4ME11   A0A2R7WPN6   A0A158NYZ4   T1HUU0   B4KQ28   U5EYX4   A0A1B0D9L7   A0A151I4Y1   A0A1B6I0U8   A0A1Q3FBF2   B0WCA6   A0A3L8DVP7   A0A1Q3FBI6   A0A0J9RB55   B3NSN1   Q7JRF1   A0A1Q3FBP1   B4P7K6   Q7JY00   A0A195D0P0   E2AN98   A0A2J7RDA2   A0A151WQL2   A0A195FSM5   A0A026W4W5   A0A336KHT4   A0A151JM13   A0A336N3K5   A0A170Y973   A0A1Y1K0K5   A0A1J1IX65   A0A1I8N3Z8   A0A1B6I8G2   A0A0P4W8P5   A0A0N7ZC53   A0A0A9WBJ2   Q5BI25   A0A2Z5HVJ3   A0A3Q0IJN0   A0A146LIT5   T1JJK6   A0A0P4VV66   E9HEQ5   A0A0P5K8X5   A0A0P4X756   A0A0P5SLV6   A0A0P5FC03   A0A0Q9WCA1   B7P7A2   V5HNN0   A0A2L2YF56   R7TDZ4   A0A3B3ZAT1   A0A3B4UR77   A0A3B4Y9X4   A0A3Q0IJE3   A0A0J9TYQ6   Q86P32   A0A0R1DNQ1   A0A293L4S0   A0A3P8S0Q5   A0A131XH75  

Pubmed

12715162    26354079    28756777    24845553    25401762    26823975    + More
28004739    18362917    19820115    26369729    20566863    20798317    21719571    17994087    21347285    30249741    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24508170    25315136    27129103    21292972    25765539    26561354    23254933    25463417   

EMBL

AB090308    BAC10622.1    AB079869    BAB85200.1    ODYU01004929    SOQ45307.1    + More
GDQN01008567    JAT82487.1    KQ461108    KPJ09183.1    NWSH01002247    PCG68826.1    KQ459594    KPI96204.1    KZ150006    PZC75217.1    KK852430    KDR24026.1    GBHO01038500    GBHO01038499    GBHO01038497    GBHO01038496    GBHO01031822    GBRD01005702    GDHC01016362    GDHC01006493    JAG05104.1    JAG05105.1    JAG05107.1    JAG05108.1    JAG11782.1    JAG60119.1    JAQ02267.1    JAQ12136.1    GEZM01098912    JAV53649.1    GECZ01023883    JAS45886.1    GEBQ01008906    JAT31071.1    KQ971319    KYB28874.1    GECL01002896    JAP03228.1    GEDC01027906    JAS09392.1    GDAI01000401    JAI17202.1    DS235820    EEB17737.1    LJIG01016364    KRT80824.1    GFDF01003561    JAV10523.1    GFDF01003562    JAV10522.1    GFDF01003548    JAV10536.1    KZ288400    PBC26265.1    JR036332    AEY57081.1    JR036328    AEY57077.1    GL449444    EFN82669.1    KQ434972    KZC12742.1    GL888668    EGI58583.1    JR036329    AEY57078.1    JR036326    AEY57076.1    JR036325    AEY57075.1    CM000362    EDX06568.1    CH940662    EDW58776.1    KK855235    PTY21582.1    ADTU01004412    ADTU01004413    ACPB03018899    CH933808    EDW08130.1    GANO01000004    JAB59867.1    AJVK01028321    KQ976448    KYM85878.1    GECU01027164    GECU01026272    GECU01015271    JAS80542.1    JAS81434.1    JAS92435.1    GFDL01010130    JAV24915.1    DS231886    EDS43351.1    QOIP01000003    RLU24491.1    GFDL01010187    JAV24858.1    CM002911    KMY92914.1    CH954179    EDV56533.1    AE013599    BT001663    AAM68720.1    AAN71418.1    GFDL01010054    JAV24991.1    CM000158    EDW90041.1    AY089525    AAL90263.1    AAM68721.1    KQ977004    KYN06483.1    GL441149    EFN65100.1    NEVH01005291    PNF38816.1    KQ982821    KYQ50189.1    KQ981276    KYN43590.1    KK107419    EZA51078.1    UFQS01000381    UFQT01000381    SSX03398.1    SSX23763.1    KQ978993    KYN26692.1    UFQT01004057    SSX35467.1    GEMB01003530    JAR99687.1    GEZM01098913    GEZM01098911    JAV53650.1    CVRI01000059    CRL03750.1    GECU01024519    JAS83187.1    GDRN01072844    JAI63489.1    GDRN01072846    JAI63488.1    GBHO01038495    GBHO01038494    GBHO01038493    GBHO01031823    GBHO01031821    GBRD01005703    GDHC01021635    JAG05109.1    JAG05110.1    JAG05111.1    JAG11781.1    JAG11783.1    JAG60118.1    JAP96993.1    BT021399    AAX33547.2    MF688638    AXC43905.1    GDHC01010638    JAQ07991.1    JH431671    GDKW01003087    JAI53508.1    GL732630    EFX69800.1    GDIQ01187726    LRGB01000376    JAK63999.1    KZS19482.1    GDIP01246061    JAI77340.1    GDIQ01102462    JAL49264.1    GDIQ01256576    JAJ95148.1    KRF78478.1    ABJB010235018    ABJB010385636    ABJB010456290    ABJB010537428    ABJB010968219    DS650755    EEC02474.1    GADI01006803    GANP01009105    GEFM01003838    JAA67005.1    JAB75363.1    JAP71958.1    IAAA01023621    LAA06749.1    AMQN01000382    KB310317    ELT91978.1    KMY92915.1    BT003505    AAF58710.1    AAO39509.1    KRJ98876.1    GFWV01001287    MAA26017.1    GEFH01001697    JAP66884.1   

Proteomes

UP000053240    UP000218220    UP000053268    UP000027135    UP000007266    UP000009046    + More
UP000242457    UP000008237    UP000076502    UP000007755    UP000000304    UP000008792    UP000005205    UP000015103    UP000009192    UP000092462    UP000078540    UP000002320    UP000279307    UP000008711    UP000000803    UP000002282    UP000078542    UP000000311    UP000235965    UP000075809    UP000078541    UP000053097    UP000078492    UP000183832    UP000095301    UP000079169    UP000000305    UP000076858    UP000001555    UP000014760    UP000261520    UP000261420    UP000261360    UP000265080   

PRIDE

Q8MMJ8    Q8T0Z9    Q5BI25   

Pfam

PF05739   SNARE        + More
PF09177   Syntaxin-6_N

Interpro

IPR000727   T_SNARE_dom        + More
IPR015260   Syntaxin-6_N       
IPR010989   SNARE       
IPR006012   Syntaxin/epimorphin_CS       
IPR011990   TPR-like_helical_dom_sf       
IPR000744   NSF_attach       

SUPFAM

SSF47661   SSF47661        + More
SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

Q8MMJ8   Q8T0Z9   A0A2H1VWT2   A0A1E1W691   A0A194QUH9   A0A2A4JAN1   + More
A0A194PTX0   A0A2W1BPH4   A0A067RJI7   A0A0A9WJV0   A0A1Y1JWF2   A0A1B6F6K1   A0A1B6M580   A0A139WLW2   A0A0V0G678   A0A1B6C7E3   A0A0K8TS70   E0VWI1   A0A0T6B0E7   A0A1L8DVT4   A0A1L8DVR3   A0A1L8DVT7   A0A2A3E3H8   V9I9E9   V9I8X9   E2BNR0   A0A154PLL2   F4X4M9   V9I7K5   V9I9E4   V9I7P4   B4QB35   B4ME11   A0A2R7WPN6   A0A158NYZ4   T1HUU0   B4KQ28   U5EYX4   A0A1B0D9L7   A0A151I4Y1   A0A1B6I0U8   A0A1Q3FBF2   B0WCA6   A0A3L8DVP7   A0A1Q3FBI6   A0A0J9RB55   B3NSN1   Q7JRF1   A0A1Q3FBP1   B4P7K6   Q7JY00   A0A195D0P0   E2AN98   A0A2J7RDA2   A0A151WQL2   A0A195FSM5   A0A026W4W5   A0A336KHT4   A0A151JM13   A0A336N3K5   A0A170Y973   A0A1Y1K0K5   A0A1J1IX65   A0A1I8N3Z8   A0A1B6I8G2   A0A0P4W8P5   A0A0N7ZC53   A0A0A9WBJ2   Q5BI25   A0A2Z5HVJ3   A0A3Q0IJN0   A0A146LIT5   T1JJK6   A0A0P4VV66   E9HEQ5   A0A0P5K8X5   A0A0P4X756   A0A0P5SLV6   A0A0P5FC03   A0A0Q9WCA1   B7P7A2   V5HNN0   A0A2L2YF56   R7TDZ4   A0A3B3ZAT1   A0A3B4UR77   A0A3B4Y9X4   A0A3Q0IJE3   A0A0J9TYQ6   Q86P32   A0A0R1DNQ1   A0A293L4S0   A0A3P8S0Q5   A0A131XH75  

PDB

2NPS     E-value=5.85814e-09,     Score=141

KEGG

100141464    K08498 syntaxin 6 | (RefSeq) Syx6, Bmsyx6; syntaxin 6

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0048193   GO:0016020   GO:0005623   GO:0005484   GO:0006886   GO:0008021   GO:0006906   GO:0031201   GO:0030285   GO:0048278   GO:0000149   GO:0012505   GO:0005829   GO:0042147   GO:0016192   GO:0016081   GO:0007269   GO:0005886   GO:0005515   GO:0019538   GO:0030145   GO:0005622   GO:0006508   GO:0007169  

PANTHER

PTHR13768  

Length:

194

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.87658

Exp number, first 60 AAs:

0

Total prob of N-in:

0.75891

inside

1  -  173

TMhelix

174  -  193

outside

194  -  194

 

 

Pi

0.183947

Theta

14.371366

Tajima's D

-2.27965

CLR

14.631779

CSRT

0.00254987250637468

Interpretation

Possibly Positive selection