Gene

KWMTBOMO00164

Annotation

putative_RNA-directed_DNA_polymerase_from_transposon_BS-like_Protein_[Tribolium_castaneum]

Location

Bomo_Chr1(-):5118219-5120266      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.745 PlasmaMembrane   Reliability : 1.244

CDS

ATGGAGACAGCGTATAAAAAATATTTGTTGAGTATAGAGAGAGACATCGGTGATAATCCAAAAATATTTTGGAAGTTTATTAAAGATAAGAGACAAAGTAGGCATAATTGTAATAAATATTATGATTACTTGGGAAAACCTGTGGAAGGACAATACGCGGCAGATGCATTTGCAACTTACTTCAGTTCAGTTTTCTTAGCCGATGAACCCAAATTAGATCCAACTGAGGCCCAGCATAGTGCAGCAATAACATCACAGTTTTGTTCCAGTGCTCGAGTAGCTTTATTGACTGTAGATAATTCCGACCTGCGCTGTGCTGTGAAGCGCATTAAGCCGTTCTCCGCATCAGGTCCAGATCGTATCCCTTCCTTTTTGGCTAAGGATTGTATAAGTGTGCTTAGTGTACCACTACTACATATTTATAATCTCTCACTCCAAATGTCCACATATCCATCTACGTGGAAGCACACTAGAGTAACTCCGGTCTTCAAGGGTGGTGACCGCACAGATGTGAAAAACTATCGACCCATCGCAGTGTTATCAGTATTTGCAAAGATATTTGAGTCCATTATTAATAAACATGTTAGTGCGCAGATCCGGAACCAATTGACTGACAGTCAACATGGTTTTCGAGCTGGTAGATCTACGGCAACTAACCATATTAATTTCGTCAACTATGTTGCTGCTGAAATGGATGCAGGGAAACAAGTCGACGCTGTATACTTAGACTTTGAAAAAGCCTTCGACCGTGTCGATAATGACGTACTGTTGATGAAATTTGCTTCATTCGGATTTACCCCAAAACTCCTCAAATTATTTTCTTCTTATCTCTCTGATAGGTCTCAGCATGTTGAGTTAGCGGGTTTCAAATCTAAAACTTATTTTACAAGATCAGGGGTCAGTCAGGGTAGTACGCTTGGTCCCACTCAGTTTTTAATCATGATAAATGATCTATCTTCTATTCTCAGTGAGAGGACCAAGTGTCTTATGTTTGCGGACGATCTTAAGCTGTACGTTGGGGTCGGGTGTGATGCTGAGCACCATGCTTTGCAACGCGACATTACTCGGGTTGCAGAATGGGGAGAGCGTAACCGCTTGCATTTTAATACTAATAAATGCAAGGTCGTTGCTTACAGCCGGTCACGGTCGCCCGTGTTGTTTCCATACCATTTATCTGGAGTCATTTTGAATCATGTGGCAGTTATACGTGACCTGGGAGTTATTTTCGATTCCAAGCTAACGTTTAAAGATCACATACAAAATATATGTAAAAGGGGTAGTGGTCTGCTCGGGTTCATAATTCGTCAGACGCACGACTTTGTAGGCCATCGTGTGATTGTTATGCTATACGATGCCTATTTGCGAAGTAGTCTTGAATATAACGCACTCGTGTGGGATCCTCGCGAAGCAGTTCAAAAGCTAATGCTGGAAAAACTACATAAAAAATTTTGCAGGTTCCTATTCAAGAAAATGTATGGATACTATCCGTTCTTGTATCCATCACTTTATGTGACTGGTATGGTCGGATTAGATACTCTTGAGCTCAGACGGAAGATGACTCTTATGGTGCATTATTATCAGCTATTGCATAACAAAATTGATAACTCCACTGCACTGGAATCAGTGTCGTTATATGTGCCTGATGGCTACATGCGCGGATGTATGTGTGGAGGGGTGCGTCGCCAGCGGCAGCTTCTTAGTACTATGCACGCGCGTACGCAGCACACCGCTAACTCCCCGACGCATCGTGCTGTCTCGTTACTCAATGGCTTGCTAGCCTATGCTCCGGAAATGGATATATTCCATGATGGTTTGCAGCGATTTATTGTTGTTGTTAGAAATTACTTAAGCTAA

Protein

METAYKKYLLSIERDIGDNPKIFWKFIKDKRQSRHNCNKYYDYLGKPVEGQYAADAFATYFSSVFLADEPKLDPTEAQHSAAITSQFCSSARVALLTVDNSDLRCAVKRIKPFSASGPDRIPSFLAKDCISVLSVPLLHIYNLSLQMSTYPSTWKHTRVTPVFKGGDRTDVKNYRPIAVLSVFAKIFESIINKHVSAQIRNQLTDSQHGFRAGRSTATNHINFVNYVAAEMDAGKQVDAVYLDFEKAFDRVDNDVLLMKFASFGFTPKLLKLFSSYLSDRSQHVELAGFKSKTYFTRSGVSQGSTLGPTQFLIMINDLSSILSERTKCLMFADDLKLYVGVGCDAEHHALQRDITRVAEWGERNRLHFNTNKCKVVAYSRSRSPVLFPYHLSGVILNHVAVIRDLGVIFDSKLTFKDHIQNICKRGSGLLGFIIRQTHDFVGHRVIVMLYDAYLRSSLEYNALVWDPREAVQKLMLEKLHKKFCRFLFKKMYGYYPFLYPSLYVTGMVGLDTLELRRKMTLMVHYYQLLHNKIDNSTALESVSLYVPDGYMRGCMCGGVRRQRQLLSTMHARTQHTANSPTHRAVSLLNGLLAYAPEMDIFHDGLQRFIVVVRNYLS

Uniprot

A0A2W1B2I7   A0A2W1BVH6   A0A2W1BAZ4   A0A2A4JV67   A0A1B6KA64   A0A1B6KI85   + More
A0A1Y1MD08   D7GXK5   D7GXK8   D7GXK7   V5GTW8   A0A1Y1KXC2   D7GXK2   A0A1Y1KS26   A0A1Y1NC99   A0A1Y1JXM0   A0A0R3Q9H7   A0A3P7SV72   D7GXK9   A0A1Y1MYJ6   A0A1Y1K5G1   A0A147BQA9   A0A147BKN6   A0A147BMS6   A0A023EYX7   A0A147BKW8   J9LK97   A0A147BPQ9   A0A147BLW3   A0A139W9M8   A0A1Y1NIA6   A0A2S2P7I8   A0A147BM65   A0A0R3Q7A0   A0A2A4JB85   A0A2S2P1K1   A0A1W7R6M7   A0A1W7R6F5   A0A0P6JS06   A0A131XS42   A0A2J7PBJ9   A0A2J7Q1D2   A0A0P6IVX2   A0A2J7Q308   A0A0P6J4T9   A0A2S2NJ55   A0A131XS34   A0A1Y1MYU4   A0A224XJM9   A0A2S2P8J1   A0A2S2PKE0   A0A147BLG5   A0A131XUY4   J9JJD6   A0A0P6IZ62   A0A2J7PH98   Q17003   F5HRJ0   A0A2J7QB70   A0A2J7Q4R1   A0A2J7Q8V3   A0A2J7PTY4   A0A2H8TY56   A0A131XPZ6   U5ETF0   A0A1G4M228   A0A2J7PUN5   A0A2J7Q6G3   A0A147BJQ2   A0A3P7E401   A0A2M4CUU6   X1X2L3   A0A2J7QVC0   A0A2M4CUL1   A0A147BSB2   A0A2J7PW08   A0A131XV73   X1WVM0   A0A1W7R687   A0A0K8VXH1   A0A131XR06   A0A0A1X4N6   A0A2J7R0I0   A0A146KUF2   J9LUC1   X1WLK7   A0A1W7R665   A0A131XTD9   A0A2S2P7T9   X1WZG3   A0A146MAH9   J9L2B5   A0A2S2P3W2   J9KYJ0   A0A147BI04   A0A1Y1MYW8   V5H8T0  

Pubmed

28756777    28004739    18362917    19820115    25474469    26999592    + More
8069416    21540111    25830018    26823975    25765539   

EMBL

KZ150413    PZC70972.1    KZ149924    PZC77634.1    KZ150173    PZC72589.1    + More
NWSH01000614    PCG75292.1    GEBQ01031644    JAT08333.1    GEBQ01028810    JAT11167.1    GEZM01038166    JAV81746.1    GG694237    EFA13480.1    GG694238    EFA13486.1    EFA13487.1    GALX01004783    JAB63683.1    GEZM01073829    GEZM01073824    GEZM01073823    JAV64810.1    EFA13482.1    GEZM01075215    JAV64203.1    GEZM01007159    JAV95329.1    GEZM01097911    JAV54049.1    UZAG01001867    VDO12276.1    EFA13485.1    GEZM01017372    JAV90742.1    GEZM01096738    GEZM01096736    GEZM01096735    GEZM01096734    JAV54606.1    GEGO01002809    JAR92595.1    GEGO01004110    JAR91294.1    GEGO01003622    JAR91782.1    GBBI01004294    JAC14418.1    GEGO01004033    JAR91371.1    ABLF02022753    GEGO01002670    JAR92734.1    GEGO01003658    JAR91746.1    KQ972212    KYB24594.1    GEZM01001798    JAV97519.1    GGMR01012775    MBY25394.1    GEGO01003558    JAR91846.1    UZAG01001120    VDO10445.1    NWSH01002032    PCG69367.1    GGMR01010742    MBY23361.1    GEHC01000920    JAV46725.1    GEHC01000932    JAV46713.1    GDUN01000797    JAN95122.1    GEFM01006319    JAP69477.1    NEVH01027086    PNF13710.1    NEVH01019411    PNF22402.1    GDUN01000798    JAN95121.1    NEVH01019072    PNF22968.1    GDUN01000801    JAN95118.1    GGMR01004539    MBY17158.1    GEFM01006329    JAP69467.1    GEZM01017202    JAV90842.1    GFTR01008205    JAW08221.1    GGMR01013083    MBY25702.1    GGMR01016717    MBY29336.1    GEGO01003785    JAR91619.1    GEFM01006330    JAP69466.1    ABLF02028025    ABLF02028028    GDUN01000793    JAN95126.1    NEVH01025142    PNF15711.1    U03849    AAA53489.1    AB607192    BAK26811.1    NEVH01025296    NEVH01016302    NEVH01006564    PNF15439.1    PNF25825.1    PNF37995.1    NEVH01018377    PNF23575.1    NEVH01016945    PNF25017.1    NEVH01021219    PNF19791.1    GFXV01006926    MBW18731.1    GEFM01006322    JAP69474.1    GANO01004402    JAB55469.1    FLMD02000119    SCV65652.1    NEVH01021194    PNF20040.1    NEVH01017475    PNF24177.1    GEGO01004385    JAR91019.1    UYWW01005329    VDM14076.1    GGFL01004857    MBW69035.1    ABLF02022364    ABLF02041596    NEVH01010477    PNF32532.1    GGFL01004858    MBW69036.1    GEGO01001755    JAR93649.1    NEVH01020939    PNF20522.1    GEFM01006325    JAP69471.1    ABLF02006362    GEHC01000958    JAV46687.1    GDHF01008728    JAI43586.1    GEFM01006327    JAP69469.1    GBXI01008013    JAD06279.1    NEVH01008240    PNF34337.1    GDHC01020139    JAP98489.1    ABLF02014660    ABLF02019782    GEHC01000981    JAV46664.1    GEFM01006321    JAP69475.1    GGMR01012902    MBY25521.1    ABLF02041544    GDHC01002190    JAQ16439.1    ABLF02007491    ABLF02041729    GGMR01011552    MBY24171.1    ABLF02027115    ABLF02027120    ABLF02055498    GEGO01005479    JAR89925.1    GEZM01017203    JAV90839.1    GANP01010944    JAB73524.1   

Proteomes

UP000218220    UP000007266    UP000050602    UP000007819    UP000235965    UP000270924    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2W1B2I7   A0A2W1BVH6   A0A2W1BAZ4   A0A2A4JV67   A0A1B6KA64   A0A1B6KI85   + More
A0A1Y1MD08   D7GXK5   D7GXK8   D7GXK7   V5GTW8   A0A1Y1KXC2   D7GXK2   A0A1Y1KS26   A0A1Y1NC99   A0A1Y1JXM0   A0A0R3Q9H7   A0A3P7SV72   D7GXK9   A0A1Y1MYJ6   A0A1Y1K5G1   A0A147BQA9   A0A147BKN6   A0A147BMS6   A0A023EYX7   A0A147BKW8   J9LK97   A0A147BPQ9   A0A147BLW3   A0A139W9M8   A0A1Y1NIA6   A0A2S2P7I8   A0A147BM65   A0A0R3Q7A0   A0A2A4JB85   A0A2S2P1K1   A0A1W7R6M7   A0A1W7R6F5   A0A0P6JS06   A0A131XS42   A0A2J7PBJ9   A0A2J7Q1D2   A0A0P6IVX2   A0A2J7Q308   A0A0P6J4T9   A0A2S2NJ55   A0A131XS34   A0A1Y1MYU4   A0A224XJM9   A0A2S2P8J1   A0A2S2PKE0   A0A147BLG5   A0A131XUY4   J9JJD6   A0A0P6IZ62   A0A2J7PH98   Q17003   F5HRJ0   A0A2J7QB70   A0A2J7Q4R1   A0A2J7Q8V3   A0A2J7PTY4   A0A2H8TY56   A0A131XPZ6   U5ETF0   A0A1G4M228   A0A2J7PUN5   A0A2J7Q6G3   A0A147BJQ2   A0A3P7E401   A0A2M4CUU6   X1X2L3   A0A2J7QVC0   A0A2M4CUL1   A0A147BSB2   A0A2J7PW08   A0A131XV73   X1WVM0   A0A1W7R687   A0A0K8VXH1   A0A131XR06   A0A0A1X4N6   A0A2J7R0I0   A0A146KUF2   J9LUC1   X1WLK7   A0A1W7R665   A0A131XTD9   A0A2S2P7T9   X1WZG3   A0A146MAH9   J9L2B5   A0A2S2P3W2   J9KYJ0   A0A147BI04   A0A1Y1MYW8   V5H8T0  

PDB

6AR3     E-value=2.16507e-08,     Score=142

KEGG

105841548    no KO assigned | (RefSeq) uncharacterized LOC105841548

GO

GO:0016021   GO:0003964  

Length:

617

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

17.25357

Exp number, first 60 AAs:

0.00248

Total prob of N-in:

0.04072

outside

1  -  617

 

 

Pi

0

Theta

0

Tajima's D

-0.720135

CLR

0

CSRT

0

Interpretation

Uncertain