SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00160  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002152
Annotation
PREDICTED:_nuclear_pore_complex_protein_Nup153-like_[Bombyx_mori]
Location
Bomo_Chr1(+):5033747-5047459      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.641
 

Sequence

CDS
ATGTCAGGCTTATTGCCAAGTACCATTACTAAATGGTTTAGTAGTCCTAGTACGTCAAATGCTAATGGAGCAACACCAACAGCTGATGTCACAGACTCTTCCACTGAAGATGAATCACCAGAAAGTCCTGTCAGCACTCAGCCTCCAGCAAAACGCATGCGATTTAGTACTCCTGGAAAATACAATCAATTTGGTTCTGCAGATGGGAATTCTGTGCTGACTACAGTTGAAGCCAATTCACAATGCTCCTCAACCTTTAGCATTATACAGTCAACACCTGGGCGAAATACATTTCGACAAAATACTAACTTTATGTCGCCACAGACTTCTAGTACAATTCGTTCCATAGATGATTCCAATGTGGATAGAAAGGATACAAGTTCTTCCTCAGTATTTAAAAAACAGCACACACTTTCAACAATTGGTCATTCTGTAGCTGTGAAGAGGAAATCTATATTTGAATTATCTACTAATAATAGTGAGACTGCACAAGCAAATTCTATGAAAACTGTCCATAAAGATAGAAATCCATCATTCAAAGCTAGTCTCCTTGGTTCGCCTTTTTACTCAGGACGAACCGTGTATGGGGGTGCTTCTTCATCCTACATGAATCAGCCCAATATTAAACAAAGAAAAGTCGCTCATATAAATGAATCTCCAGCTAATGAGACAGTAACAATGAGTAATTCTGCGAGAAAGATAATGGACCTTCTTGAACAATATTCCTCTCCATTGGCGGAAGCGAAAAGAATCCCACGATATCAGAAGTCACCTAGAAATGAGAGTATAAATAGTACCGCAAATACAATTAAACCAGCTGCCTACCGAACTCAAGAACTGCACATTCCAAGTATAGCTTCAATTTTACGAGTGAAACAGAAATCTCGCTTAATGGACTCAACAAGTGCTGCACGACAACTTATTGCCTCACATAGTAGTGCCGCGCCAGAGTTTAGCCCTTATCCAACAACCATTACACAAAAGGAATTAGCTGTTAACGAACAAAACAGCAATTTGACAACAAAAGTAAAGACTAGATTAACAAGACCAAATAGAGGCGATAAGTTCGATGATGTTTTGACTCCAGTTCAACTGCCAACAGGAGTTTTGCAAATTGATAAAAATAATATGCCTAAATTTACCTTAGGCAAACCATTTTCCTCAACGCCCAACTTAATATCTACATCTACGCCTGCTGCATCAGTGAACAAATTGGTTGTAGCCCAAAATACAAACCCCCTTTCTGGAACCACTACAAGTTCATCTACAGCATTTCTAAGTGCAACAAAGGAATCATTTGCGCAGAAAAATATTGAAAGTTCCAAGGATTCAGTTTCAGCTTGGTCTACAAAAGAGAATTTCATACAGAAATCTACAGACAAGGACACCACCTGGATAACAAAGGAAACTCCAGTACAGAAAGTTAATAACAGTCTCAAAGACTCAAAACCAGAGTGGAAATGTGCTGAATGTTGGGTACAAAACAAAGAAGATGTTGACAAGTGTGTTTGTTGTGGGGTCACACGGCCGTCAAGTGTTGTTGGGAAAGTGACTAAGTGTTCTTGCAAGCTTAGTGACACACAAGCTCATATTGATAAATGTGAAACATGTGAGAAATCAGAAGCAGATGCCATCAGTATAAAAAGTAATGAGATAACATGGAAGTGTGATGATTGTCGGGCTTTGAATGAAGCAAATATAGAAAAATGTGTATGCTGTGGCAGTGCCCATTCTAACAAACTACCCGCACCAGTTGTATCTGAGGCAAATGATAGTAGAAAATGGAAATGCAATGACTGTTGGGTTATGAATAAAGGAACAGCAGTTAAATGTGAATGCTGTGGCAGTGCCAACACTAATGATACAATTTCTGAAGTGCCCCCTGAAAAAAGAAATCCAAGTATTTCAGATGGTGATTGGAAATGTGATGACTGTTGGATTACAAATAAGAGCAGTGTAGAAAAATGTGCTGCTTGTGGTGGATCGAAGCCTGGCCTTAAAAATAATAATTCCTCACTTTTGAATGTTTCAGCATCAACTATAAATCGTAATGATTTACTTTCCACTGTGAATTCACAGAAAAATCTGACATGGGAATGCCAAAGTTGTTTGGTTAGGAACAATAATGAGAAAACATCGTGTGTCTGCTGCGGAGCTGAGCCATCTAACAATTCAGTTCCAGAGAAAAAATCTTTTAATTTCGGGATTAATCCAAATACTTCATTTAAGTTTGGCATTAATCCTGTTGAGCAACAAGTTAATCTAGTTAAGAAAACTGAGGAATCTAGTGCTGCTTTAAAGACAAATCCAGAAGTTTCTGAAAGTAACACATTGGAAAAAATTCCAATGTTTACATTTACTTTGCCTTCTAAGAAATCTGAAGATAAAATTGATGATGTTAAAGGAAATATTGACGCCACGAAAGTTAAGTTTTCATTTGGAATCCCAAAAGCTTCCACTGCATCAGAAGTAGGAGCTGGCAATTCTCATGGAGAAAAAGACAAACAAGAAGAAGTGACAAAAGTAAATGTCAATACTTCAATGTTTGAGAATCCTAAATTGGGAAATGACTTGTTAAAGCCAAGTGATAATAAACCTGCGGTTGTAACTGCACTTCCAACAGTATCTGTAAATGAGAATAAAAATACAACTACTAATTCTTTACACACACAATCTGGAGAAAAAAGTGAAAAGGCACTGTTGAATAATACTTTCACATTCTCGGCGGGCAGTAAAAATATTGTGACTAACATGTTTAAGAGCCCGTCTACTGTGGCTACTACTTCAATTTCCTTTGCTTTACCAGTACAAACGACAGTGAAATCTACGGAGGCACCAGCAACTTCGTTATTTCAACAAAAAGGATTTAACACTCCAGCATTCAAAACTGATAGTAATGCTTCTCTATTCAAGAAGACTGAAACTGAAAAATCACCCTTTCAAAATTCAATTGCTTCGCCTGTATTCCAGAGTCCCACACCAAGTTCTACATTATTCCAAAAACCAGAAAATAGCACATCTTCTATTATGTTTCCCGCAAGTGATGTTTCTGTAGCTTCCACTGTATCATTATTTCAAAATAGTGATAATATAATAACTACGACATCCCAACCTGCTACGGCAAATTCCCCCGTTTTTGGTTTTACTGCTAACTCTTTTAAACCAGCTTCGACTGCTGTAGAGAAACCCAAATTCAACTTTACTTTGGGAAAAACTGAGAATTTCACCTTCGAAAATAAATTTTCTCCTATTGGAAACAACAGAAATTCGACAAGTAGCTTTGCTTTACCTACAAGTACCATAATTCCTACTGTCAATGGTCTAACTGGAAATGCTTTAAGTGGTGGCAGCAATATGATAGGTCCTAATAATGGCAATACAATTGGAAATACTGTTATGCCTGTTAGCAATTCTATAGGCAGTGATGTACTTAAACCTCTAGGGTCGAGTGGTGCATTACCCGGAAATACATTGGGAGGTGGAAATGGATTACCTGCTAGTAATACAGTATCAAGTGGATTCTTTGGACAATCAACTCAGAATGAAAATTTGTGGGGCACTTCAAACAACACTTCTAATTTGTTTGCAGCAAGTACGACAGCTAATCCTTTGCAAAAACCAGCTGCGTTTAATTTTGGTGCGCCATCATCATTATCGCCATTTAATAATAATAATACGAGTTCAGTATTTGGCAGCAGTACGCAGTCGACGCAGAATATTTTCGGAATTGCAACACAACAGAATCCTGCTAGTCAACCAAATCTCTTTCCTAGCCCAGCACAGAACCAAAACGCCCCCAATATCTTCGGTAGCCCTGTACCTCCTAGCAATTCTGTGGGACTATTTGGAACAGCAAATGTCGGTTCTACACCAACTTTTGGAAACCAGAACCAATCTATGCCATCTTTAACACCGGCACTGACACCAACCTTTAATTTCGGCGCCTCACAAGCTCCAGGAGTTTTTGGATTTGGACAGCAACAGCAGCCGCCTCAATCTCTGCAACAGCCGCAACTTCCTCAACAACAGCAGCAGCAACAGCAGCAACAACAACAACAGCAACAACAACAACAGCAGCAACAGCAGCAGCAGCACCAGCAACAACTGCAACAGGGTCAAACTAGTGTGTATAATTTTGGAGGCATGTCGGGTACCACGCCGCAGGTTCAATTCAAGATGGGCACTGCACCGACTCCTAACACAGCTGTACGTCGGGTGAGAAAGGCTATCCGTCGAAACCCGCAACGATGA
Protein
MSGLLPSTITKWFSSPSTSNANGATPTADVTDSSTEDESPESPVSTQPPAKRMRFSTPGKYNQFGSADGNSVLTTVEANSQCSSTFSIIQSTPGRNTFRQNTNFMSPQTSSTIRSIDDSNVDRKDTSSSSVFKKQHTLSTIGHSVAVKRKSIFELSTNNSETAQANSMKTVHKDRNPSFKASLLGSPFYSGRTVYGGASSSYMNQPNIKQRKVAHINESPANETVTMSNSARKIMDLLEQYSSPLAEAKRIPRYQKSPRNESINSTANTIKPAAYRTQELHIPSIASILRVKQKSRLMDSTSAARQLIASHSSAAPEFSPYPTTITQKELAVNEQNSNLTTKVKTRLTRPNRGDKFDDVLTPVQLPTGVLQIDKNNMPKFTLGKPFSSTPNLISTSTPAASVNKLVVAQNTNPLSGTTTSSSTAFLSATKESFAQKNIESSKDSVSAWSTKENFIQKSTDKDTTWITKETPVQKVNNSLKDSKPEWKCAECWVQNKEDVDKCVCCGVTRPSSVVGKVTKCSCKLSDTQAHIDKCETCEKSEADAISIKSNEITWKCDDCRALNEANIEKCVCCGSAHSNKLPAPVVSEANDSRKWKCNDCWVMNKGTAVKCECCGSANTNDTISEVPPEKRNPSISDGDWKCDDCWITNKSSVEKCAACGGSKPGLKNNNSSLLNVSASTINRNDLLSTVNSQKNLTWECQSCLVRNNNEKTSCVCCGAEPSNNSVPEKKSFNFGINPNTSFKFGINPVEQQVNLVKKTEESSAALKTNPEVSESNTLEKIPMFTFTLPSKKSEDKIDDVKGNIDATKVKFSFGIPKASTASEVGAGNSHGEKDKQEEVTKVNVNTSMFENPKLGNDLLKPSDNKPAVVTALPTVSVNENKNTTTNSLHTQSGEKSEKALLNNTFTFSAGSKNIVTNMFKSPSTVATTSISFALPVQTTVKSTEAPATSLFQQKGFNTPAFKTDSNASLFKKTETEKSPFQNSIASPVFQSPTPSSTLFQKPENSTSSIMFPASDVSVASTVSLFQNSDNIITTTSQPATANSPVFGFTANSFKPASTAVEKPKFNFTLGKTENFTFENKFSPIGNNRNSTSSFALPTSTIIPTVNGLTGNALSGGSNMIGPNNGNTIGNTVMPVSNSIGSDVLKPLGSSGALPGNTLGGGNGLPASNTVSSGFFGQSTQNENLWGTSNNTSNLFAASTTANPLQKPAAFNFGAPSSLSPFNNNNTSSVFGSSTQSTQNIFGIATQQNPASQPNLFPSPAQNQNAPNIFGSPVPPSNSVGLFGTANVGSTPTFGNQNQSMPSLTPALTPTFNFGASQAPGVFGFGQQQQPPQSLQQPQLPQQQQQQQQQQQQQQQQQQQQQQQQHQQQLQQGQTSVYNFGGMSGTTPQVQFKMGTAPTPNTAVRRVRKAIRRNPQR

Summary

Uniprot
H9IY19   A0A1E1WDN4   A0A2A4K093   A0A2A4JZJ3   A0A0L7LIM8   A0A0C9RDC4   + More
Pubmed
19121390    26227816   
EMBL
BABH01016038    GDQN01005942    JAT85112.1    NWSH01000326    PCG77436.1    PCG77435.1    + More
JTDY01000923    KOB75418.1    GBYB01011132    JAG80899.1   
Proteomes
UP000005204    UP000218220    UP000037510   
PRIDE
H9IY19   
Pfam
PF08604   Nup153        + More
PF00641   zf-RanBP
Interpro
IPR001876   Znf_RanBP2        + More
IPR013913   Nup153_N       
IPR026054   Nucleoporin       
IPR036443   Znf_RanBP2_sf       
SUPFAM
SSF90209   SSF90209       
ProteinModelPortal
H9IY19   A0A1E1WDN4   A0A2A4K093   A0A2A4JZJ3   A0A0L7LIM8   A0A0C9RDC4   + More

Ontologies

KEGG
101746595    K14296 nuclear pore complex protein Nup153 | (RefSeq) nuclear pore complex protein Nup153-like
PATHWAY
03013    RNA transport - Bombyx mori (domestic silkworm)
GO
GO:0046872   GO:0005623   GO:0017056   GO:0008270   GO:0006457   GO:0000413   GO:0016020   GO:0043565   GO:0043401   GO:0003677   GO:0003707   GO:0007169   GO:0016021  
PANTHER
PTHR23193  

Topology

Length:
1416
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00645999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  1416
 
 

Population Genetic Test Statistics

Pi
0.939176
Theta
2.868368
Tajima's D
-1.956824
CLR
0.689656
CSRT
0.0111494425278736
Interpretation
Possibly Positive selection
Peptides ×
Source Sequence Identity Evalue
26280517 TSAQDKIEEVEDSAK 100.00 3e-06
26280517 TVYDETIIDDR 100.00 7e-05
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