SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00149
Annotation
mariner_transposase_[Bombyx_mori]
Full name
Innexin      
Location in the cell
Nuclear   Reliability : 2.81
 

Sequence

CDS
ATGGAATTGACTCGAGAAAATTCAAGAACGATGATTTATTATGACTTTCGAAATGGTTTAACACAAAAACAGTGTGTTGACCGGATGATTTCTGCATTTGGTGATGAAGCCCCATCCAAAACCACAATTTATCGCTGGTTTGCTGAGTTTCAACGTGGACGTGTCAAGCTCAGTGATGATCCCCGTCAAGATCGCCCAAAAACTGCAGTCACCCAAGAAAACGTTGATGCTGTGCGTAAGCTGATTGAGGAAGATCGACATGTGACATACCGCGAAATTCAGGCAACTTTAGACATTGGCATGAGTCAAATACAAATAATCTTGCATGAACAATTAGGTGTAAAAAAGTTGTTTTCCCGATGGATACCGCATTCGCTCTGTGAAGAGCAAAAAGCGGCTCGCGTTACTTGGTGCGTCAGAACTCTCGAAAGATTCCACGCAGGATCCTCAAATGCTGTATACAACATTGTATCATTTGACGAATCCTGGATATACGCGTACGAACCCGAAACAAAAAACCAGTCACGAGTTCGGGTGTTCGAAAATGAGTTAAAGCCAACAAAAATTGTTCGTTCACGGAGTGTTGCAAAAAAAATGGTGGCCACGTTTGTCTCCAAAACCGGCCATGTTACGACTATTCCTCTTGAGGGACAAAGAACGGTTAATGCAGAATGGTATGCTAGCATTTGTTTGCCACAGGTCGTTTCTGAACTCCGTAAAGAGAACTGTAACCGCCGCATCATCCTCCATCACGACAATGCGAGTTCTCACACCGCGCACAGAACAAAAGAGTTTTTAGAGCAAGAAAACATAGAATTATTAGACCATCTGCCGTACAGCCCCGACCTAAGCCCTAATGATTTCTATACTTTCCCTAAAATAAAGAATAAATTGCGTGGACAGAGATTTTCATCACGTGAAGAAGCTGTGGACGCCTACAAAACGGCCATTTTGGAGACCTCAACTTCCGAATGGAATGGTTGCTTCAATGATTGGTTCCATCGTATGGAAAAATGTGTCAAATTTCGCGGAGAATACTTCGAAAAGGAATAA
Protein
MELTRENSRTMIYYDFRNGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQDRPKTAVTQENVDAVRKLIEEDRHVTYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSFDESWIYAYEPETKNQSRVRVFENELKPTKIVRSRSVAKKMVATFVSKTGHVTTIPLEGQRTVNAEWYASICLPQVVSELRKENCNRRIILHHDNASSHTAHRTKEFLEQENIELLDHLPYSPDLSPNDFYTFPKIKNKLRGQRFSSREEAVDAYKTAILETSTSEWNGCFNDWFHRMEKCVKFRGEYFEKE

Summary

Description
Structural component of the gap junctions.
Similarity
Belongs to the pannexin family.
EMBL
DQ443409    ABF51498.1    GBGD01001983    JAC86906.1    GBBI01001865    JAC16847.1    + More
KX930998    APL98291.1    GECL01002811    JAP03313.1    GAKP01015435    JAC43517.1    GECU01007301    JAT00406.1    NIVC01001798    PAA63957.1    DQ174779    ABA55502.1    NIVC01001731    PAA64652.1    AM906136    CAP20050.1    U49974    AAC52011.1    KX931001    APL98294.1    AM906135    CAP20049.1    AM231072    CAJ76986.1    AM231082    CAJ76996.1    AM231079    CAJ76993.1    AM231080    CAJ76994.1    AM906145    CAP20059.1    AM906142    AM906144    CAP20056.1    AM231070    CAJ76984.1    AM231069    CAJ76983.1    AM906133    CAP20047.1    AM231074    CAJ76988.1    NSIT01000395    PJE77748.1    GALX01005282    JAB63184.1    AM906154    CAP20068.1    LBMM01023216    KMQ82764.1    HACA01020102    CDW37463.1    KX930994    APL98287.1    GAHY01000550    JAA76960.1    AM906141    CAP20055.1    LBMM01023556    KMQ82700.1    GQ398105    ADB28039.1    NIVC01000364    PAA84702.1    GBBI01001812    JAC16900.1    KX930999    APL98292.1    NEVH01008208    PNF34637.1    LBMM01011272    KMQ86923.1    NEVH01000249    PNF43951.1    NEVH01027114    NEVH01027075    NEVH01026089    NEVH01026087    NEVH01024426    NEVH01021956    NEVH01021925    NEVH01015301    NEVH01013964    NEVH01013194    NEVH01011885    NEVH01009393    NEVH01007824    NEVH01007823    NEVH01006721    NEVH01006578    NEVH01005888    NEVH01005885    NEVH01005277    NEVH01002149    NEVH01001358    PNF13652.1    PNF13785.1    PNF14826.1    PNF14870.1    PNF17130.1    PNF18970.1    PNF19346.1    PNF27270.1    PNF28165.1    PNF28197.1    PNF30137.1    PNF31284.1    PNF33174.1    PNF35196.1    PNF35254.1    PNF37314.1    PNF37715.1    PNF38363.1    PNF38519.1    PNF39139.1    PNF42450.1    PNF42722.1    GBBI01001710    JAC17002.1    GFTR01005295    JAW11131.1    GAHY01000734    JAA76776.1    AM906153    CAP20067.1    AM906137    CAP20051.1    NEVH01020956    NEVH01016344    NEVH01006723    NEVH01003746    PNF20350.1    PNF25331.1    PNF37025.1    PNF40184.1    NIVC01001708    NIVC01001487    NIVC01000426    NIVC01000107    PAA64861.1    PAA67372.1    PAA83241.1    PAA90594.1    NIVC01000831    PAA76287.1    GAHY01001080    JAA76430.1    GAHY01001054    JAA76456.1    KX931000    APL98293.1    GBGD01001947    JAC86942.1    GECU01035151    JAS72555.1    GBGD01001923    JAC86966.1    LBMM01005538    KMQ91440.1    NEVH01002553    PNF42057.1    GBGD01002089    JAC86800.1    KX930995    APL98288.1    AM906139    CAP20053.1    GFTR01005334    JAW11092.1    NEVH01018383    PNF23469.1    LBMM01010241    KMQ87583.1    GGMS01002163    MBY71366.1    AM906140    CAP20054.1    NEVH01025141    PNF15743.1    AJ507226    CAD45368.1    HACA01000873    CDW18234.1    L06041    U11652    AAA28265.1    AAC46947.1    KL363191    KFD56881.1    U11650    AAC46945.1    GFDG01000031    JAV18768.1    GGMS01001658    MBY70861.1    GFTR01005237    JAW11189.1    ABLF02008389    ABLF02015395    ABLF02015399    AM906151    AM906152    CAP20065.1    U11654    AAC46948.1    KL363276    KFD49184.1    KX931003    APL98296.1    NEVH01027098    PNF13663.1    GFAC01005487    JAT93701.1    KL367509    KFD67959.1    KX930996    APL98289.1   
Pfam
PF13358   DDE_3        + More
PF17906   HTH_48
PF01359   Transposase_1
PF00876   Innexin
PF02755   RPEL
Interpro
IPR038717   Tc1-like_DDE_dom        + More
IPR041426   Mos1_HTH       
IPR001888   Transposase_1       
IPR000990   Innexin       
IPR004018   RPEL_repeat       
PDB
5HOO     E-value=1.171e-30,     Score=332

Ontologies

Topology

Subcellular location
Cell membrane  
Cell junction  
Gap junction  
Length:
350
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00248
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.04484
outside
1  -  350
 
 

Population Genetic Test Statistics

Pi
4.792456
Theta
3.804359
Tajima's D
0.077761
CLR
0.003919
CSRT
0.422078896055197
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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