Silkworm Genome Informatics Database

Gene

KWMTBOMO00135

Pre Gene Modal

BGIBMGA002141

Annotation

PREDICTED:_arf-GAP_with_Rho-GAP_domain?_ANK_repeat_and_PH_domain-containing_protein_2_[Bombyx_mori]

Location

Bomo_Chr1(+):4282059-4285192 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.171

CDS

ATGGATACCCCGCCTATTCCTAAGCCTAGAAGCGCATTTTTACCTCAAAATGATCCACTAAAACAGCCCGTTCCACTGCCTCGTACTAAAGTACCTCCCAATGATCGAGGTTCGGCTTCAGAAATTCTTCGATCGATAAGTTCAGTTTCAAAACAATTAACAGAAGATGTGGCCTCGAAGCTTAGCAGCTCCGCAAAGTCCGCTAATGAGAAGATAGAAAAATCGATAATAGACGGGTCGAGGTTCGCCAGAGGTACATTAGAAAAAACCATTACAACATCTCGCGCTGTGAGAGATTCCGTTACTAAGTCTGTGATTGAGGGCACACGGTCTGCCGGCCTCAAGTTACGACGCTCAACGAAACCTGACAGTATAGAAGAACCAGATCAGAGATGTGTGTCCATGCCTGTTGTAGATGTGAGTTTATTTGATAATATTCAGTTTCATTCACCTTTGTTAGAACAGAAGAGATATAAAAATGAAGATGACACTGAAACGGCAGACATACCTCCTCTTCAGCTGAATGCTAGACATTTAGATGATATGTCGTTATTTTCTAATCATTCTGACACTAATACAGATACTGTCAGTAACTTTTCTCATGATAGCAGAGAATTAGATGACAATTCCAATGAGCATCTAACCTATGATACTCCCAAACCTTCAAGAACTAACAGCATTGTGAGTTTTGGATCATTCCCAGAAATACCAGAAAGAAGAAAAAATAGAGAGTCTGTTGAAGTAATGAGACAAAACTCCATGTATGAAAATTGGACTCTTCCATTTCAAGCTAAAAAGGAAAATAAAACAAAAGATGTTGAATTGGTTACAGAAAATACATCAAGACCAAGTAAAAGTACAATATATGAATTTGATCCTTTGCATAAAAGTAGTACAAGCTCAAAGTACCAAGGAGTTAGTAATGAACTTTTGCTTCTTGAGTCATTTCTCACTGGAGATACATATGGTACCATAGTCTCTAACGATACTAATGATGATAAGTTTAATTTTGATGAGAGTGATTATTTTAATCCTCCAACACCACCTGAGAGATTTGATAGTTTATTCCCTGAAGAAAAGCCAACTGAAAGGGTGCAAAATAGAGATAAAAACTCAAATTGGTTTGTGTCAGATTCTGATTCTAAATCGATTACAGAAGACGAAACAAAGCAATCAAATTCAGTTATACAAAGATTCTCAAGAAGGCTGAAGTTAGACAATGTTCTTAACAAATCAACTAAACAAACATTACCAAAGATAGAAGTGGTCGAAAGGCCTCCTGTTCACACTCAGCCTGTGCCATACTTCAGTGGCATCCTTATGAAGATAGTGTCTGGAGTAGTAGAAGACTTATTTAAAAATTCACAATCTCGGTATTGTGTTTTATCTGATCAGAAGTTAATGTGTTACACAGACCCTACAAATTCAATCCTTAAAGAGGCATACACACTCGATAACATTTATTCAATTCAAATAGTCTTGCCACTATCTTCTAGCACTACCAGCAACTCATATTGCTTCGAGTTGTCTGTCTCATCTGGAGGGATCCGGAACACACCGCGCAAGATCCTGTTCAGCTGTGCGAGTGCTTCTGAACGTCGACATTGGGCACAGAAATTTGTAGAGCATCTCACAAACAACTTTTCAACAAACCACACTTCGGAGATTACAAGATGCGGATGGTGTTATCTTAAGGTTGGAATATTCTAG

Protein

MDTPPIPKPRSAFLPQNDPLKQPVPLPRTKVPPNDRGSASEILRSISSVSKQLTEDVASKLSSSAKSANEKIEKSIIDGSRFARGTLEKTITTSRAVRDSVTKSVIEGTRSAGLKLRRSTKPDSIEEPDQRCVSMPVVDVSLFDNIQFHSPLLEQKRYKNEDDTETADIPPLQLNARHLDDMSLFSNHSDTNTDTVSNFSHDSRELDDNSNEHLTYDTPKPSRTNSIVSFGSFPEIPERRKNRESVEVMRQNSMYENWTLPFQAKKENKTKDVELVTENTSRPSKSTIYEFDPLHKSSTSSKYQGVSNELLLLESFLTGDTYGTIVSNDTNDDKFNFDESDYFNPPTPPERFDSLFPEEKPTERVQNRDKNSNWFVSDSDSKSITEDETKQSNSVIQRFSRRLKLDNVLNKSTKQTLPKIEVVERPPVHTQPVPYFSGILMKIVSGVVEDLFKNSQSRYCVLSDQKLMCYTDPTNSILKEAYTLDNIYSIQIVLPLSSSTTSNSYCFELSVSSGGIRNTPRKILFSCASASERRHWAQKFVEHLTNNFSTNHTSEITRCGWCYLKVGIF

Uniprot

H9IY08 A0A2H1WCC5 A0A2A4JJ61 A0A2Z5U7D3 A0A0L7K3X9 D6WE41 + More

Pubmed

19121390 26227816 18362917 19820115

EMBL

BABH01015956 ODYU01007707 SOQ50731.1 NWSH01001204 PCG72135.1 AP017515 + More
BBB06854.1 JTDY01011299 KOB57055.1 KQ971318 EFA00372.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000007266

PRIDE

H9IY08

Pfam

PF00169 PH + More
PF00620 RhoGAP

Interpro

IPR011993   PH-like_dom_sf        + More
IPR001849   PH_domain
IPR000198   RhoGAP_dom
IPR008936   Rho_GTPase_activation_prot
IPR037858   RhoGAP_ARAP
IPR029071   Ubiquitin-like_domsf

SUPFAM

SSF48350 SSF48350 + More
SSF54236 SSF54236

Gene 3D

2.30.29.30 1.10.555.10

CDD

cd04385 RhoGAP_ARAP

ProteinModelPortal

H9IY08 A0A2H1WCC5 A0A2A4JJ61 A0A2Z5U7D3 A0A0L7K3X9 D6WE41 + More

KEGG

101745159 no KO assigned | (RefSeq) arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2

GO

GO:0005096 GO:0007165 GO:0005547

Length:

569

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00458

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00052

outside

1 - 569

Pi

3.576343

Theta

5.320379

Tajima's D

0.101557

CLR

0.119663

CSRT

0.410529473526324

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics