Gene

KWMTBOMO00134

Annotation

PREDICTED:_RNA-binding_protein_41_isoform_X1_[Monodelphis_domestica]

Location

Bomo_Chr1(-):4264636-4267118      View in EpiBrowser

Full name

Splicing factor 3B subunit 6-like protein      

Alternative Name

Pre-mRNA branch site p14-like protein

Location in the cell

Cytoplasmic   Reliability : 0.888

CDS

ATGTCGGATGAAGCAAATAACAAAATCTTATTTATATCAAATTTGAGCCCATTAGTTGGAGCCAAGGAGCATTTAGCCGAATTAATTAGGCTATTTGGTATAATCGGTAAACTTGCTGAAGTGATCGTGCTCGACAATAATCTCGAGCGAGGTGGGGCTTTTGTTATCTATAAAAAAGCTGAAAACGCGCAAAAAGCCATTCGTATTTTACAAAATTATAACATTCTTGGAAGTGTTATCATTTTTTCTGTGGACGCCAGAAAACTGTTCGACGACGACGGCGACTTAATAACGATTGTAGAGGCTGATGCGGCTTAA

Protein

MSDEANNKILFISNLSPLVGAKEHLAELIRLFGIIGKLAEVIVLDNNLERGGAFVIYKKAENAQKAIRILQNYNILGSVIIFSVDARKLFDDDGDLITIVEADAA

Description

Necessary for the splicing of pre-mRNA.

Similarity

Belongs to the peptidase A1 family.

Keywords

Complete proteome   mRNA processing   mRNA splicing   Nucleus   Reference proteome   RNA-binding  

Feature

chain  Splicing factor 3B subunit 6-like protein

Uniprot

A0A1Y1UZZ3   F6YDN9   A0A168CYR5   A0A0L0RXK4   A0A395IQC9   A0A151LD62   + More
A0A2P9CTE9   I1BUP6   A0A0F7ZGT7   A0A2U1J002   A0A2P9C984   O59670   A0A1X2IRU4   A0A163B835   M5E965   A0A1Y1WQT3   A9VCS6   G3VHC6   A0A2P9GPB2   A0A024X2R0   W4IYD5   A0A1Y2AHD6   A0A2P9BJG2   A0A060RWK3   A0A1X2HLE1   W7FDC7   A0A0L1I424   W7EWS2   A0A024V3E0   A0A024VMX3   A0A024W2V7   C0H5A4   A0A0L7KG55   W7J8K2   A0A024WMI2   W4IDK7   W7JPT6   A0A2P9DL12   A0A2G4T777   A0A1X0RGB7   A0A367JPL7   A0A0C7B7H1   E1ZTK9   A8Q255   A0A2T9XX78   A0A1C7NQM6   A0A3F2RP13   A0A162MS34   S2JBY3   M2W5C9   A0A2P9DJ84   A0A1Y2HD57   A0A168QVA4   F2UD51   A0A1X2G5B3   M2X3J4   M4BTL1   U9ULF6   A0A1Y2GC95   A0A3D4XVB7   A0A367INC4   A0A3G2SBW6   A0A183RDJ4   N1QD85   A0A1X1BQJ5   A0A1Y1VIZ8   H3GAL5   A0A0B7MTB9   A0A0M8MXT2   A0A168QA50   A0A197JW70   A0A0C9MG99   A0A103XNR9   A0A3M6VTF1   A0A077WE34   A0A1Y2AFM2   A0A1Y2BD33   A0A0P1AQS6   G4Z804   A0A2P4XUF3   A0A3M7I0A6   A0A397SP25   V9G1Z1   W2XVD7   W2REY9   W3A5E1   A0A081B3U9   A0A329RFW4   W2P733   A0A077W990  

Pubmed

17495919    27071652    27002652    19578406    25359922    29764946    + More
11859360    18273011    21709235    12368864    12368867    27956601    29674435    20852019    18000048    23471408    21148394    30148503    23236275    27784333    16946064    26786968    28186564    29764372   

EMBL

MCFH01000047    ORX44211.1    AZGZ01000002    KZZ97167.1    GG745328    GG745330    + More
KNE54880.1    KNE56529.1    QKRW01000024    RAL62515.1    LVLB01000014    LT969436    KYN96871.1    SOV17221.1    LT969450    SOV24122.1    CH476734    EIE79926.1    KQ030573    KJZ71461.1    MBFU01001100    MBFU01000556    MBFU01000167    PVZ96883.1    PVZ98367.1    PWA01491.1    LT969422    SOV17393.1    CU329671    MCGE01000005    ORZ21242.1    KV440973    OAD78771.1    HE999557    LT671824    CCU99171.1    SHO78418.1    MCFG01000330    ORX75890.1    CH991583    EDQ84646.1    AEFK01229237    LT990242    SPJ11791.1    KI927541    ETW59809.1    KI927383    ETW54829.1    MCOG01000260    ORY21700.1    LT963426    SOS80183.1    HG810774    LVLA01000014    CDO65863.1    KYN94510.1    MCGN01000002    ORZ00171.1    KE123508    EUT81088.1    GG664984    KNG74389.1    KE123632    EUR66754.1    KI925134    ETW17077.1    KI927957    ETW29638.1    KI926497    ETW35022.1    AL844509    CAX64282.1    CH672028    KOB61884.1    KE124677    EWC74950.1    KI925599    ETW47756.1    KI926063    ETW41225.1    KE123858    NYMT01000007    EWC86958.1    PKC47071.1    LT969576    SOV81707.1    KZ303842    PHZ16880.1    KV921861    ORE10918.1    PJQL01000908    RCH91877.1    CCYT01000006    KV921351    CEG66783.1    ORE17605.1    GL433872    EFN50825.1    AAYY01000007    EDP43472.1    MBFT01001248    PVU84692.1    LUGH01000011    OBZ91445.1    MBAD02001913    MBDO02000155    RLN51093.1    RLN61472.1    AMYB01000003    OAD04765.1    KE124001    EPB85882.1    KB454495    EME30981.1    LT969562    SOV81014.1    MCFL01000053    ORZ31914.1    LT554468    SAM05614.1    GL832969    EGD74546.1    MCGT01000042    ORX45481.1    EME30980.1    JH597849    KI276600    ESA21249.1    MCFF01000044    ORZ06825.1    DPKO01000017    HCU00647.1    PJQM01006740    RCH79182.1    CP033152    AYO43837.1    KB456269    EMF09226.1    MBFZ01000002    ORM42366.1    MCFH01000006    ORX57139.1    DS566105    LN719426    CEP08352.1    LGAV01000001    KOS15910.1    LT554349    SAM04058.1    KV442041    OAQ29465.1    DF836406    GAN06259.1    LEKV01004570    KVH94113.1    QLLG01000007    QKXF01000054    RMX70044.1    RQM18489.1    LK023316    CDS05419.1    MCOG01000266    ORY21408.1    MCOG01000163    ORY32684.1    CCYD01000810    CEG43910.1    JH159153    EGZ19659.1    NCKW01007916    NCKW01006457    POM69205.1    POM71583.1    QWIT01001208    RMZ18967.1    QKYT01000294    RIA87758.1    ANIZ01000099    ETI57063.1    ANIX01000128    ETP26835.1    KI669561    ETN24013.1    ANIY01000110    ETP54808.1    ANJA01000128    ETO85810.1    MJFZ01001097    RAW23261.1    KI683995    KI670464    KI677268    KI690493    ETK96822.1    ETL50175.1    ETM03233.1    ETM56500.1    LK023313    CDS03119.1   

Proteomes

UP000193719    UP000002280    UP000054350    UP000009138    UP000245591    UP000002485    + More
UP000193560    UP000077315    UP000186303    UP000193944    UP000001357    UP000007648    UP000193920    UP000242180    UP000001450    UP000054289    UP000242254    UP000242414    UP000252139    UP000054919    UP000242381    UP000008141    UP000008837    UP000245699    UP000093000    UP000277300    UP000284657    UP000077051    UP000014254    UP000030680    UP000193411    UP000078561    UP000007799    UP000242146    UP000011713    UP000193648    UP000253551    UP000269793    UP000050792    UP000016931    UP000005238    UP000054107    UP000037751    UP000078512    UP000053815    UP000243975    UP000282087    UP000286097    UP000054928    UP000002640    UP000281677    UP000265703    UP000018721    UP000018958    UP000018817    UP000018948    UP000028582    UP000251314    UP000053236    UP000053864    UP000054423    UP000054532   

PRIDE

O59670    W7JPT6   

Pfam

PF00076   RRM_1        + More
PF01199   Ribosomal_L34e
PF00026   Asp

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR034150   SF3B6_RRM       
IPR003954   RRM_dom_euk       
IPR008195   Ribosomal_L34Ae       
IPR021109   Peptidase_aspartic_dom_sf       
IPR033121   PEPTIDASE_A1       
IPR018065   Ribosomal_L34e_CS       
IPR034164   Pepsin-like_dom       
IPR038562   Ribosomal_L34Ae_sf       

SUPFAM

SSF54928   SSF54928        + More
SSF50630   SSF50630       

Gene 3D

3.30.70.330     2.40.70.10     3.40.1800.40    

CDD

cd12241  RRM_SF3B14
cd05471  pepsin_like

ProteinModelPortal

A0A1Y1UZZ3   F6YDN9   A0A168CYR5   A0A0L0RXK4   A0A395IQC9   A0A151LD62   + More
A0A2P9CTE9   I1BUP6   A0A0F7ZGT7   A0A2U1J002   A0A2P9C984   O59670   A0A1X2IRU4   A0A163B835   M5E965   A0A1Y1WQT3   A9VCS6   G3VHC6   A0A2P9GPB2   A0A024X2R0   W4IYD5   A0A1Y2AHD6   A0A2P9BJG2   A0A060RWK3   A0A1X2HLE1   W7FDC7   A0A0L1I424   W7EWS2   A0A024V3E0   A0A024VMX3   A0A024W2V7   C0H5A4   A0A0L7KG55   W7J8K2   A0A024WMI2   W4IDK7   W7JPT6   A0A2P9DL12   A0A2G4T777   A0A1X0RGB7   A0A367JPL7   A0A0C7B7H1   E1ZTK9   A8Q255   A0A2T9XX78   A0A1C7NQM6   A0A3F2RP13   A0A162MS34   S2JBY3   M2W5C9   A0A2P9DJ84   A0A1Y2HD57   A0A168QVA4   F2UD51   A0A1X2G5B3   M2X3J4   M4BTL1   U9ULF6   A0A1Y2GC95   A0A3D4XVB7   A0A367INC4   A0A3G2SBW6   A0A183RDJ4   N1QD85   A0A1X1BQJ5   A0A1Y1VIZ8   H3GAL5   A0A0B7MTB9   A0A0M8MXT2   A0A168QA50   A0A197JW70   A0A0C9MG99   A0A103XNR9   A0A3M6VTF1   A0A077WE34   A0A1Y2AFM2   A0A1Y2BD33   A0A0P1AQS6   G4Z804   A0A2P4XUF3   A0A3M7I0A6   A0A397SP25   V9G1Z1   W2XVD7   W2REY9   W3A5E1   A0A081B3U9   A0A329RFW4   W2P733   A0A077W990  

PDB

6CMN     E-value=0.000473982,     Score=96

KEGG

101741570    K14408 cleavage stimulation factor subunit 3 | (RefSeq) protein suppressor of forked

GO

GO:0003723   GO:0000398   GO:0005689   GO:0030626   GO:0097157   GO:0005686   GO:0005685   GO:0045292   GO:0071013   GO:0035614   GO:0030619   GO:0005681   GO:0003676   GO:0005634   GO:0000381   GO:0016607   GO:0006412   GO:0003735   GO:0004190   GO:0005840   GO:0000166   GO:0007186   GO:0016020   GO:0015074   GO:0048013   GO:0005003   GO:0005887   GO:0007169   GO:0016021  

Subcellular location

Nucleus  

Length:

105

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.71258

Exp number, first 60 AAs:

0.09953

Total prob of N-in:

0.35769

outside

1  -  105

 

 

Pi

4.275687

Theta

5.355256

Tajima's D

-0.555632

CLR

0.165379

CSRT

0.230188490575471

Interpretation

Uncertain