Gene

KWMTBOMO00125

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(-):3817877-3818835      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.608

CDS

ATGGTCTACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGCTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGAGGAGGCGCTCGCCGCTGACTATAGGTGGCGGGCTGAACTTCGTACCTGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCACGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTTACGCAGGTGCTCACTGGGCATGGTTGTTTCGGTGAGTTCCTGCACCGGATCACAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MVYLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEEEALAADYRWRAELRTWGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADLAQALAL

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   A0A0J7KCI1   O01419   A0A0J7N1D9   A0A0J7N7H9   A0A0J7KCQ3   A0A0J7MY07   A0A0J7MZM4   A0A0J7KS67   A0A0J7KJB9   E2BVR6   A0A0J7KM11   A0A194R5D3   A0A0J7KIY3   A0A0J7KJH4   A0A0J7KIY5   A0A2H1WNZ5   A0A0J7KLT9   A0A0J7JZF7   A0A0J7JZ13   A0A0L7R7C3   A0A0J7KJG6   A0A0J7N7S8   A0A0J7JXN3   A0A0J7NEG9   A0A0J7KQK3   A0A3L8DIL1   A0A3L8DDV9   A0A0J7MX22   A0A3L8D2G3   A0A0J7KFG9   A0A0J7KIW1   A0A2S2NPF9   A0A0J7KIM6   A0A2S2PJ67   A0A0J7KPR0   A0A0J7K3F1   A0A0J7KYD2   J9KRD0   A0A0J7K840   A0A0J7KWU5   A0A0J7JYP2   A0A2S2P6S8   A0A0J7KPZ3   J9KJG8   A0A0J7KRB8   E2A7V5   A0A0J7NCZ4   A0A0J7NMN5   A0A0J7NAV8   A0A0J7KL06   A0A2H8TR36   A0A0J7KC11   A0A2S2NME4   A0A2S2PYG9   J9KLZ3   A0A2S2PSC1   A0A2S2NJ82   A0A3Q0JIB3   X1WJY4   A0A0J7K6Z4   A0A0J7KRU6   A0A0Q9WRU0   A0A0J7MY17   A0A2S2PEU2   J9LAC1   A0A2H8THF8   J9LDW8   A0A2S2PDK9   A0A0J7KIA8   A0A0J7KF40   J9LJ80   A0A2S2PEZ7   A0A0J7KLH8   A0A0J7KKI5   X1WPJ7   A0A0J7NFZ0   J9KNG8  

Pubmed

12644555    28756777    9092665    20798317    26354079    30249741    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
KZ150308    PZC71477.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078931    BAC06456.1    AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01009501    KMQ88083.1    D85594    BAA19776.1    LBMM01012027    KMQ86470.1    LBMM01008861    KMQ88580.1    LBMM01009494    KMQ88097.1    LBMM01014132    KMQ85305.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01003679    KMQ93242.1    LBMM01006538    KMQ90523.1    GL450953    EFN80213.1    LBMM01005707    KMQ91279.1    KQ460685    KPJ12887.1    LBMM01006909    KMQ90209.1    LBMM01006657    KMQ90417.1    LBMM01006954    KMQ90166.1    ODYU01009945    SOQ54696.1    LBMM01005733    KMQ91252.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    KQ414641    KOC66782.1    LBMM01006671    KMQ90407.1    LBMM01008682    KMQ88705.1    LBMM01024024    KMQ82631.1    LBMM01006110    KMQ90925.1    LBMM01004272    KMQ92618.1    QOIP01000007    RLU20280.1    QOIP01000010    RLU18098.1    LBMM01014909    KMQ85000.1    QOIP01000031    RLU14697.1    LBMM01008349    KMQ88951.1    LBMM01006725    KMQ90373.1    GGMR01006442    MBY19061.1    LBMM01007036    KMQ90099.1    GGMR01016864    MBY29483.1    LBMM01004634    KMQ92224.1    LBMM01015025    KMQ84953.1    LBMM01002052    KMQ95336.1    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    LBMM01011877    KMQ86578.1    LBMM01002480    KMQ94776.1    LBMM01020849    KMQ83202.1    GGMR01012534    MBY25153.1    LBMM01004505    KMQ92346.1    ABLF02041886    LBMM01003988    KMQ92922.1    GL437417    EFN70484.1    LBMM01006640    KMQ90440.1    LBMM01003245    KMQ93755.1    LBMM01007425    KMQ89740.1    LBMM01006063    KMQ90967.1    GFXV01003903    MBW15708.1    LBMM01009738    KMQ87908.1    GGMR01005740    MBY18359.1    GGMS01001211    MBY70414.1    ABLF02023401    ABLF02029423    ABLF02060278    GGMR01019609    MBY32228.1    GGMR01004600    MBY17219.1    ABLF02011238    LBMM01012595    KMQ86127.1    LBMM01003941    KMQ92969.1    CH963857    KRF98317.1    LBMM01014122    KMQ85315.1    GGMR01015354    MBY27973.1    ABLF02017307    GFXV01001748    MBW13553.1    ABLF02016435    ABLF02016436    ABLF02064751    GGMR01014918    MBY27537.1    LBMM01007162    KMQ89979.1    LBMM01008422    KMQ88894.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMR01015159    MBY27778.1    LBMM01005948    KMQ91066.1    LBMM01006287    KMQ90731.1    ABLF02013380    ABLF02013382    LBMM01005474    KMQ91485.1    ABLF02005203    ABLF02041316   

Proteomes

UP000036403    UP000008237    UP000053240    UP000053825    UP000279307    UP000007819    + More
UP000000311    UP000079169    UP000007798   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   A0A0J7KCI1   O01419   A0A0J7N1D9   A0A0J7N7H9   A0A0J7KCQ3   A0A0J7MY07   A0A0J7MZM4   A0A0J7KS67   A0A0J7KJB9   E2BVR6   A0A0J7KM11   A0A194R5D3   A0A0J7KIY3   A0A0J7KJH4   A0A0J7KIY5   A0A2H1WNZ5   A0A0J7KLT9   A0A0J7JZF7   A0A0J7JZ13   A0A0L7R7C3   A0A0J7KJG6   A0A0J7N7S8   A0A0J7JXN3   A0A0J7NEG9   A0A0J7KQK3   A0A3L8DIL1   A0A3L8DDV9   A0A0J7MX22   A0A3L8D2G3   A0A0J7KFG9   A0A0J7KIW1   A0A2S2NPF9   A0A0J7KIM6   A0A2S2PJ67   A0A0J7KPR0   A0A0J7K3F1   A0A0J7KYD2   J9KRD0   A0A0J7K840   A0A0J7KWU5   A0A0J7JYP2   A0A2S2P6S8   A0A0J7KPZ3   J9KJG8   A0A0J7KRB8   E2A7V5   A0A0J7NCZ4   A0A0J7NMN5   A0A0J7NAV8   A0A0J7KL06   A0A2H8TR36   A0A0J7KC11   A0A2S2NME4   A0A2S2PYG9   J9KLZ3   A0A2S2PSC1   A0A2S2NJ82   A0A3Q0JIB3   X1WJY4   A0A0J7K6Z4   A0A0J7KRU6   A0A0Q9WRU0   A0A0J7MY17   A0A2S2PEU2   J9LAC1   A0A2H8THF8   J9LDW8   A0A2S2PDK9   A0A0J7KIA8   A0A0J7KF40   J9LJ80   A0A2S2PEZ7   A0A0J7KLH8   A0A0J7KKI5   X1WPJ7   A0A0J7NFZ0   J9KNG8  

KEGG

100127037    K22984 odorant receptor | (RefSeq) Or-46, BmOr-46, Or46; olfactory receptor 46

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0046983  

Length:

292

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.531189999999999

Exp number, first 60 AAs:

0.46053

Total prob of N-in:

0.01596

outside

1  -  292

 

 

Pi

19.396148

Theta

21.128503

Tajima's D

-0.210569

CLR

0

CSRT

0.315184240787961

Interpretation

Uncertain