Gene

KWMTBOMO00124  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002010

Annotation

PREDICTED:_PQ-loop_repeat-containing_protein_3_[Bombyx_mori]

Location

Bomo_Chr1(-):3794965-3802465      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.978

CDS

ATGACTATACTGTCGTCTTTATTTCTCAAAGTACCGCAGATTATGTCCATACGTGAGAAAAGATCTGCCGAGGGGATATATATTCAGGCCATGCTTATGGAGATTATTGGCTTTACCATAATGTCTCTCTACAATTATACAAACAAGTATAACATCATGACCTATATGGAGTACCCTATCATACTTTTCCAAGTCTACGTAATGTTCTACTTTGTTCTCAAATATAAGAACATGCTGAACCTTCCAATTATTCCCGTAATGGTTGCTTCATACTTTGCTTCTGTGTTCGGTTTCGTCATGGATCTATTGCCGAAACAAGTTCTCTCCTATTTGGTGCCGTTTTGCACGCCACTGAGCGGATTCGCTAAAGTGACTTATATATATGGTATCATTAAATCCGGGAACGCGGACGCTGTTTCGCTCACAACGTGGATCATTTCCGTGCTGACCAATTTGGCTCGCGTCTTCACCGTTTACGTGGACTCTGGAGACGGCAAGCTGCTGGCCAATTTCATCATATCGACCCTGCTCAGTTCTGGTGTTTTCTTCACCGCCTTGCACTACCAGCAGCAGACGGCATGCTGCCCGATCCATCGCCCGCAGAAGAACCGCAATCGACCTTTCCACCAAGAATACCGTCCCCGACACGTTCACCAAGACTAA

Protein

MTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFYFVLKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLVPFCTPLSGFAKVTYIYGIIKSGNADAVSLTTWIISVLTNLARVFTVYVDSGDGKLLANFIISTLLSSGVFFTALHYQQQTACCPIHRPQKNRNRPFHQEYRPRHVHQD

Uniprot

H9IXM7   A0A2H1VVJ8   A0A2A4JKU5   A0A212F9S4   A0A0L7KYU0   A0A194QZT9   + More
A0A1B6M2M9   A0A232F5V7   A0A1I8MMC0   K7J619   A0A023EJS5   A0A154NYH8   U5EXY8   A0A0L0CJJ5   A0A158NT05   Q16QQ4   A0A069DQI1   Q175Q8   A0A088ALQ5   A0A1I8NN35   A0A026WXF5   A0A0A9YI41   E2BWM5   A0A1L8ECM5   A0A2A3E2I1   T1EAZ9   E2AZT7   A0A195EGD6   A0A1Q3FNG7   A0A151X6Q4   A0A182N7V3   B4LBP9   A0A182FGS9   F4WY66   Q7Q7E1   A0A182V9L9   B0WZP7   B0WY68   A0A182KW37   A0A182SJW7   W5J5B8   A0A182R2M2   B4J1H0   A0A182QIV5   A0A182TV91   Q29D61   A0A0M4EJ60   B4H7X5   A0A084WEX1   A0A182K5W8   A0A3B0K0I2   A0A182YNM5   A0A182LXM7   B4NLZ5   B4L9B3   A0A310SME4   A0A182J4M8   A0A0K8VAH2   A0A182PB69   A0A1Y1MQA1   A0A1A9WLJ0   A0A182XD16   A0A1A9YEF5   A0A182WAM2   A0A0L7QSV7   A0A0K8TK53   B3M8Z8   A0A2S2R496   A0A1B0FDQ5   A0A182HQF8   B4PHS7   A0A182HQF7   B4HU31   A0A1W4W6U2   Q9VZF3   B3NC07   B4QQI7   A0A151I3R4   A0A336M2G6   A0A3B0JT48   A0A336M306   A0A195FEU1   A0A1J1IKZ9   A0A2P8XRB0   A0A1L8DTV7   J3JY36   A0A1W4WLJ0   A0A195CB71   A0A139WL27   A0A1B0DA55   A0A1A9ZS39   E0VZP5   A0A1S3DCV1   A0A0P4WHC2  

Pubmed

19121390    22118469    26227816    26354079    28648823    25315136    + More
20075255    24945155    26483478    26108605    21347285    17510324    26334808    24508170    30249741    25401762    20798317    17994087    21719571    12364791    14747013    17210077    20966253    20920257    23761445    15632085    24438588    25244985    28004739    26369729    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    29403074    22516182    23537049    18362917    19820115    20566863   

EMBL

BABH01015922    BABH01015923    ODYU01004530    SOQ44512.1    NWSH01001185    PCG72214.1    + More
AGBW02009564    OWR50487.1    JTDY01004298    KOB68315.1    KQ461108    KPJ09106.1    GEBQ01009786    JAT30191.1    NNAY01000849    OXU26214.1    JXUM01004302    GAPW01004313    KQ560172    JAC09285.1    KXJ84007.1    KQ434783    KZC04677.1    GANO01002288    JAB57583.1    JRES01000398    KNC31664.1    ADTU01025464    CH477738    EAT36723.1    GBGD01002958    JAC85931.1    CH477396    EAT41834.1    KK107078    QOIP01000011    EZA60426.1    RLU16812.1    GBHO01012308    JAG31296.1    GL451150    EFN79906.1    GFDG01002486    JAV16313.1    KZ288470    PBC25349.1    GAMD01000568    JAB01023.1    GL444277    EFN61066.1    KQ978957    KYN27315.1    GFDL01005905    JAV29140.1    KQ982476    KYQ56055.1    CH940647    EDW68676.2    GL888439    EGI60823.1    AAAB01008960    EAA11818.3    EDO63654.1    DS232212    EDS37722.1    DS232182    EDS36945.1    ADMH02002185    ETN57944.1    CH916366    EDV95861.1    AXCN02000590    CH379070    EAL30553.2    CP012525    ALC44014.1    CH479219    EDW34765.1    ATLV01023260    ATLV01023261    KE525341    KFB48765.1    OUUW01000002    SPP76868.1    AXCM01001258    CH964278    EDW85363.2    CH933816    EDW17288.1    KQ761005    OAD58425.1    GDHF01016486    GDHF01002957    JAI35828.1    JAI49357.1    GEZM01024249    GEZM01024248    JAV87833.1    KQ414758    KOC61556.1    GDAI01003011    JAI14592.1    CH902618    EDV38942.1    GGMS01015585    MBY84788.1    CCAG010004130    APCN01008969    CM000159    EDW93386.1    CH480817    EDW50452.1    AE014296    AY113399    AAF47870.2    AAM29404.1    CH954178    EDV50895.1    CM000363    CM002912    EDX09193.1    KMY97545.1    KQ976472    KYM83984.1    UFQT01000448    SSX24435.1    SPP76869.1    UFQT01000118    SSX20378.1    KQ981636    KYN38881.1    CVRI01000054    CRL00228.1    PYGN01001486    PSN34543.1    GFDF01004267    JAV09817.1    APGK01049538    BT128160    KB741156    KB632169    AEE63121.1    ENN73519.1    ERL89439.1    KQ978023    KYM98052.1    KQ971321    KYB28642.1    AJVK01028832    DS235854    EEB18850.1    GDRN01053669    JAI66151.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000037510    UP000053240    UP000215335    + More
UP000095301    UP000002358    UP000069940    UP000249989    UP000076502    UP000037069    UP000005205    UP000008820    UP000005203    UP000095300    UP000053097    UP000279307    UP000008237    UP000242457    UP000000311    UP000078492    UP000075809    UP000075884    UP000008792    UP000069272    UP000007755    UP000007062    UP000075903    UP000002320    UP000075882    UP000075901    UP000000673    UP000075900    UP000001070    UP000075886    UP000075902    UP000001819    UP000092553    UP000008744    UP000030765    UP000075881    UP000268350    UP000076408    UP000075883    UP000007798    UP000009192    UP000075880    UP000075885    UP000091820    UP000076407    UP000092443    UP000075920    UP000053825    UP000007801    UP000092444    UP000075840    UP000002282    UP000001292    UP000192221    UP000000803    UP000008711    UP000000304    UP000078540    UP000078541    UP000183832    UP000245037    UP000019118    UP000030742    UP000192223    UP000078542    UP000007266    UP000092462    UP000092445    UP000009046    UP000079169   

PRIDE

H9IXM7   

Pfam

PF04193   PQ-loop        + More
PF12937   F-box-like
PF00400   WD40

Interpro

IPR016817   MannP-dilichol_defect-1        + More
IPR006603   PQ-loop_rpt       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001810   F-box_dom       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR036047   F-box-like_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       

SUPFAM

SSF81383   SSF81383        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9IXM7   A0A2H1VVJ8   A0A2A4JKU5   A0A212F9S4   A0A0L7KYU0   A0A194QZT9   + More
A0A1B6M2M9   A0A232F5V7   A0A1I8MMC0   K7J619   A0A023EJS5   A0A154NYH8   U5EXY8   A0A0L0CJJ5   A0A158NT05   Q16QQ4   A0A069DQI1   Q175Q8   A0A088ALQ5   A0A1I8NN35   A0A026WXF5   A0A0A9YI41   E2BWM5   A0A1L8ECM5   A0A2A3E2I1   T1EAZ9   E2AZT7   A0A195EGD6   A0A1Q3FNG7   A0A151X6Q4   A0A182N7V3   B4LBP9   A0A182FGS9   F4WY66   Q7Q7E1   A0A182V9L9   B0WZP7   B0WY68   A0A182KW37   A0A182SJW7   W5J5B8   A0A182R2M2   B4J1H0   A0A182QIV5   A0A182TV91   Q29D61   A0A0M4EJ60   B4H7X5   A0A084WEX1   A0A182K5W8   A0A3B0K0I2   A0A182YNM5   A0A182LXM7   B4NLZ5   B4L9B3   A0A310SME4   A0A182J4M8   A0A0K8VAH2   A0A182PB69   A0A1Y1MQA1   A0A1A9WLJ0   A0A182XD16   A0A1A9YEF5   A0A182WAM2   A0A0L7QSV7   A0A0K8TK53   B3M8Z8   A0A2S2R496   A0A1B0FDQ5   A0A182HQF8   B4PHS7   A0A182HQF7   B4HU31   A0A1W4W6U2   Q9VZF3   B3NC07   B4QQI7   A0A151I3R4   A0A336M2G6   A0A3B0JT48   A0A336M306   A0A195FEU1   A0A1J1IKZ9   A0A2P8XRB0   A0A1L8DTV7   J3JY36   A0A1W4WLJ0   A0A195CB71   A0A139WL27   A0A1B0DA55   A0A1A9ZS39   E0VZP5   A0A1S3DCV1   A0A0P4WHC2  

KEGG

101744726    no KO assigned | (RefSeq) PQ-loop repeat-containing protein 3

GO

GO:0016021  

PANTHER

PTHR12226  

Length:

220

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

124.45901

Exp number, first 60 AAs:

28.87911

Total prob of N-in:

0.66434

POSSIBLE N-term signal

sequence

inside

1  -  24

TMhelix

25  -  47

outside

48  -  50

TMhelix

51  -  73

inside

74  -  77

TMhelix

78  -  100

outside

101  -  109

TMhelix

110  -  131

inside

132  -  137

TMhelix

138  -  157

outside

158  -  166

TMhelix

167  -  189

inside

190  -  220

 

 

Pi

29.61599

Theta

24.047182

Tajima's D

0.617263

CLR

0.066064

CSRT

0.552272386380681

Interpretation

Uncertain