Gene

KWMTBOMO00122

Pre Gene Modal

BGIBMGA002135

Annotation

PREDICTED:_LETM1_domain-containing_protein_1_isoform_X1_[Papilio_polytes]

Location

Bomo_Chr1(+):3785226-3789177      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.434

CDS

ATGACGATTCGACGAATAATTACGATGTCTGGAACAATACTACAATACAATCGTTCAGCTCCAATAATTATTAATAATTTTCAACTATTGAATCAACCCAGATTCACAACCATAACAAGGCTGAAACACACAAAAGCACTGAGAAGTGAAAAGGAAAAAATACGAACCTATTTTGTACAAAGATACATTGATTATGTAAAGAATTACACAAAAGTTCTTGAGACGAGATTTCCAAATGCAGTCAAAATGTACAGAGTATTTAGTGTTGGTATCAAAGATTTCTTAAGAGATTTAAAAATGTATATTACATTGAGAATAAAAGTTGCTAGGGATCATGGTTTCTCGAAAATGAGCCGACAAGAAATTGAATTGTACACGAAGATGCCATCAGACATGTTGAGAATAGCACCTGTTTTGATATTGTCGGCTATACCATTTGGAAACTATATTATTTTCCCTTTAGCGTTTTTAAAGCCAAGGACTTTGCTGTGTTCTCACTTTTGGTCGATCCAGCAGAAAGTTGAATTCTCCAGGCAAGAGTTAACAGAAAGACTACGTCACAATAAGCCAGTATTCAGGTCTTTACAGGCCCAAGTGGAAATCATCCCTGATGGTGATATTAAATTAAAATGGAAAAGGGTGATCGCTTCTCTTGGTTCTGGTGTTCATCCGTCACCAAAAGATGTGTTGGCTTGTAAAGACCTGTTCACGAAGGAGCCATATCAGTTGTCCAGTCTCAATTATGCTCATTTAGGACATCTACTGAAAATGCATGGCTTAAGAAAATCAATATTCAGAACAAGCAAACTAAAGTATCGAGCATTCTTACTATTAGAAATGGACAAAGCCATCATTAGAGAAGGTGGTGTGAACATTTTAAATGCTGAGACTTTGAGAAACGCATGTCACATGCGTGGATTGAATGGGAGCAACCTCCCCAACCAGGACATGAGGAATTGGTTACAAAATTGGCTGAGCGTTTCTGAAAATATTGATAGGACATCATATTCATTATTACTACATTGTCCGATTTTCTTTGCGTACAATCATCCACAGAATTGGGTACTAATTTATTAA

Protein

MTIRRIITMSGTILQYNRSAPIIINNFQLLNQPRFTTITRLKHTKALRSEKEKIRTYFVQRYIDYVKNYTKVLETRFPNAVKMYRVFSVGIKDFLRDLKMYITLRIKVARDHGFSKMSRQEIELYTKMPSDMLRIAPVLILSAIPFGNYIIFPLAFLKPRTLLCSHFWSIQQKVEFSRQELTERLRHNKPVFRSLQAQVEIIPDGDIKLKWKRVIASLGSGVHPSPKDVLACKDLFTKEPYQLSSLNYAHLGHLLKMHGLRKSIFRTSKLKYRAFLLLEMDKAIIREGGVNILNAETLRNACHMRGLNGSNLPNQDMRNWLQNWLSVSENIDRTSYSLLLHCPIFFAYNHPQNWVLIY

Uniprot

H9IY02   A0A2H1WBL1   A0A1E1WUS2   A0A2A4JKB2   D6WI31   A0A1B6IHI0   + More
A0A1B6FDL0   A0A1B6K9D4   A0A1B6CF45   A0A067R7H6   A0A0N0BJQ4   A0A1Y1MRC7   A0A2M4BRS9   W5JVI6   A0A2M4AIS4   E2B9T5   E2AN10   A0A2A3EPF8   A0A182FEY1   A0A2M3Z900   A0A088AAR0   A0A182G8R7   B0VZ66   A0A182PPE1   A0A232F4Q1   K7IQY8   Q0IG76   A0A182K2X0   A0A182MJL1   A0A1L8DK24   A0A1S4F3J8   A0A182YPJ2   A0A182HWK2   A0A182L327   A0A182TQM3   Q7Q6P8   A0A1Q3FCU2   A0A182XMP5   A0A084WJJ1   A0A182VLD1   A0A182RA96   N6SWN2   J3JVS7   A0A026WLA7   A0A069DRA5   A0A3L8E322   A0A158NQM5   A0A1I8NVP2   A0A195D510   A0A195BQW5   A0A224XP49   A0A1I8M3E0   A0A195DJ41   A0A195ERQ5   A0A1B0B459   D3TMU0   F4WKF9   A0A1A9V2W6   A0A1B0AHN1   E9HGX5   A0A1A9XK97   A0A1J1I650   A0A2J7PMD2   A0A336KLY7   A0A151XAY0   A0A182QNJ6   A0A0P5F9D7   A0A0N8B6D0   A0A1A9Y158   A0A0N8B6T6   A0A182NH49   A0A182J2Q6   A0A3B0JPK1   B4H9I2   Q29D02   B4N3P0   A0A182WKW3   A0A0M4EI39   A0A154PH07   A0A0A9XR60   B4IWL9   A0A1W4URU6   B3M686   B4LEK9   Q95ZE7   B4QM51   B3NBR1   A0A0J9RRY0   A0A0R1E0F0   B4PG00   P91617   W8C4L2   B4HK00   B4KZ59   A0A034W2N2   A0A0A1WXH1   P91616  

Pubmed

19121390    18362917    19820115    24845553    28004739    20920257    + More
23761445    20798317    26483478    28648823    20075255    17510324    25244985    20966253    12364791    14747013    17210077    24438588    23537049    22516182    24508170    26334808    30249741    21347285    25315136    20353571    21719571    21292972    17994087    15632085    18057021    25401762    11814692    22936249    17550304    9236770    24495485    25348373    25830018   

EMBL

BABH01015922    ODYU01007260    SOQ49884.1    GDQN01000513    JAT90541.1    NWSH01001185    + More
PCG72216.1    KQ971334    EFA01050.1    GECU01021330    JAS86376.1    GECZ01021489    JAS48280.1    GEBQ01031927    JAT08050.1    GEDC01025247    GEDC01006897    JAS12051.1    JAS30401.1    KK852891    KDR14252.1    KQ435711    KOX79481.1    GEZM01023639    JAV88252.1    GGFJ01006347    MBW55488.1    ADMH02000209    ETN67368.1    GGFK01007374    MBW40695.1    GL446605    EFN87522.1    GL441034    EFN65168.1    KZ288210    PBC32921.1    GGFM01004268    MBW25019.1    JXUM01009554    KQ560286    KXJ83266.1    DS231813    EDS25642.1    NNAY01001025    OXU25443.1    CH477261    EAT45681.1    AXCM01004034    GFDF01007384    JAV06700.1    APCN01001496    AAAB01008960    EAA11738.3    GFDL01009722    JAV25323.1    ATLV01024036    KE525348    KFB50385.1    APGK01053851    KB741237    KB632240    ENN72199.1    ERL90509.1    BT127345    AEE62307.1    KK107154    EZA56837.1    GBGD01002286    JAC86603.1    QOIP01000001    RLU27077.1    ADTU01023411    KQ976885    KYN07514.1    KQ976419    KYM89273.1    GFTR01004808    JAW11618.1    KQ980824    KYN12519.1    KQ982021    KYN30582.1    JXJN01008179    EZ422742    ADD19018.1    GL888199    EGI65297.1    GL732643    EFX69034.1    CVRI01000042    CRK95744.1    NEVH01024034    PNF17486.1    UFQS01000253    UFQT01000253    SSX02050.1    SSX22427.1    KQ982335    KYQ57542.1    AXCN02000346    GDIP01147951    GDIQ01258671    LRGB01000626    JAJ75451.1    JAJ93053.1    KZS17436.1    GDIQ01208419    JAK43306.1    GDIQ01207171    JAK44554.1    OUUW01000002    SPP77400.1    CH479229    EDW36458.1    CH379070    EAL30612.2    CH964095    EDW79245.1    KRF99036.1    CP012525    ALC43464.1    KQ434893    KZC10598.1    GBHO01020397    GBRD01008154    JAG23207.1    JAG57667.1    CH916366    EDV96245.1    CH902618    EDV39706.1    CH940647    EDW69094.1    AJ306692    CAC41630.1    CM000363    CM002912    EDX09734.1    KMY98426.1    CH954178    EDV50657.2    KMY98427.1    CM000159    KRK00970.1    EDW93144.1    Y10015    CAA71122.1    GAMC01005434    JAC01122.1    CH480815    EDW40736.1    CH933809    EDW17856.1    GAKP01009126    GAKP01009125    JAC49826.1    GBXI01011077    JAD03215.1    Y10018    CAA71125.1   

Proteomes

UP000005204    UP000218220    UP000007266    UP000027135    UP000053105    UP000000673    + More
UP000008237    UP000000311    UP000242457    UP000069272    UP000005203    UP000069940    UP000249989    UP000002320    UP000075885    UP000215335    UP000002358    UP000008820    UP000075881    UP000075883    UP000076408    UP000075840    UP000075882    UP000075902    UP000007062    UP000076407    UP000030765    UP000075903    UP000075900    UP000019118    UP000030742    UP000053097    UP000279307    UP000005205    UP000095300    UP000078542    UP000078540    UP000095301    UP000078492    UP000078541    UP000092460    UP000007755    UP000078200    UP000092445    UP000000305    UP000092443    UP000183832    UP000235965    UP000075809    UP000075886    UP000076858    UP000075884    UP000075880    UP000268350    UP000008744    UP000001819    UP000007798    UP000075920    UP000092553    UP000076502    UP000001070    UP000192221    UP000007801    UP000008792    UP000000304    UP000008711    UP000002282    UP000001292    UP000009192   

PRIDE

H9IY02    P91617    P91616   

Pfam

PF07766   LETM1

Interpro

IPR033122   LETM1_RBD        + More
IPR011685   LETM1       
IPR000571   Znf_CCCH       
IPR036085   PAZ_dom_sf       

SUPFAM

SSF101690   SSF101690       

ProteinModelPortal

H9IY02   A0A2H1WBL1   A0A1E1WUS2   A0A2A4JKB2   D6WI31   A0A1B6IHI0   + More
A0A1B6FDL0   A0A1B6K9D4   A0A1B6CF45   A0A067R7H6   A0A0N0BJQ4   A0A1Y1MRC7   A0A2M4BRS9   W5JVI6   A0A2M4AIS4   E2B9T5   E2AN10   A0A2A3EPF8   A0A182FEY1   A0A2M3Z900   A0A088AAR0   A0A182G8R7   B0VZ66   A0A182PPE1   A0A232F4Q1   K7IQY8   Q0IG76   A0A182K2X0   A0A182MJL1   A0A1L8DK24   A0A1S4F3J8   A0A182YPJ2   A0A182HWK2   A0A182L327   A0A182TQM3   Q7Q6P8   A0A1Q3FCU2   A0A182XMP5   A0A084WJJ1   A0A182VLD1   A0A182RA96   N6SWN2   J3JVS7   A0A026WLA7   A0A069DRA5   A0A3L8E322   A0A158NQM5   A0A1I8NVP2   A0A195D510   A0A195BQW5   A0A224XP49   A0A1I8M3E0   A0A195DJ41   A0A195ERQ5   A0A1B0B459   D3TMU0   F4WKF9   A0A1A9V2W6   A0A1B0AHN1   E9HGX5   A0A1A9XK97   A0A1J1I650   A0A2J7PMD2   A0A336KLY7   A0A151XAY0   A0A182QNJ6   A0A0P5F9D7   A0A0N8B6D0   A0A1A9Y158   A0A0N8B6T6   A0A182NH49   A0A182J2Q6   A0A3B0JPK1   B4H9I2   Q29D02   B4N3P0   A0A182WKW3   A0A0M4EI39   A0A154PH07   A0A0A9XR60   B4IWL9   A0A1W4URU6   B3M686   B4LEK9   Q95ZE7   B4QM51   B3NBR1   A0A0J9RRY0   A0A0R1E0F0   B4PG00   P91617   W8C4L2   B4HK00   B4KZ59   A0A034W2N2   A0A0A1WXH1   P91616  

KEGG

101737462    no KO assigned | (RefSeq) LETM1 domain-containing protein 1

GO

GO:0043022   GO:0016021   GO:0005739   GO:0005743   GO:0046872   GO:0005216   GO:0006811   GO:0016020   GO:0015074   GO:0048013   GO:0005003   GO:0005887   GO:0007169  

Length:

358

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.50522

Exp number, first 60 AAs:

0.00408

Total prob of N-in:

0.97441

inside

1  -  134

TMhelix

135  -  157

outside

158  -  358

 

 

Pi

21.96359

Theta

22.095931

Tajima's D

-0.274286

CLR

0.064649

CSRT

0.301734913254337

Interpretation

Uncertain