SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00113
Annotation
PREDICTED:_solute_carrier_family_22_member_13-like_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 4.984
 

Sequence

CDS
ATGTCCGAGAATTCCAAAAAAGATGATCCCAATATTGATCAGAAAGTTATTAACGAATGCGACTCAAATAAGAATGTTGATTACGACCAACTGTTGTTCTCCGCCGGCGAATTCGGGTTATATCAAGTGTATTTGTTTTTTCTCTCGGGACCTTTCTACATATGTGGTGCGTTCAGCTATTTCTCGCAGCTGTTCTTAACGGAAGCATCCTCGGACCACTGGTGTTGGATACCTGAGCTAGAAAATTTGACAGCACTAGAACGAAAGCGACTTGCGATACCGGTTGATGCTAATAATCGATTTGAATATTCTAGATGTTCATCGTATGCCGCGAACTGGAGTGAAGTGTTGATATATAGTCAAAAAGCTAACCGATCATGGCCGATTCAAAGCTGCCAAAATGGATGGGAATTCAATAATACCGAAATTCCTTATGCGACAATTACTAGTGATTTGGGATGGGTCTGCGAACAGGATACTCATCAAGCAACGGCGCAGTCTGTTTTCTTTGTGGGTTCAATATTGGGTGGTTTTATCATTGGTTGGATAGCTGATCGATTTGGAAGACTACCAGCTGCTATGGCCAGTAACCTGATTGGGTGCTTGGCAGGTATTGGAAGCGCTTTTACTAAAAGTTTCACTACGTTCACGCTATGTCGTTTTCTGATGGGAATGTCATACGACAATTGTATGATGATGACTTACTTACTCGTACTCGAGTACGTTGCTCCAAAATATAGGACCGTAATGGCGAATTTGGCTTTTAGCATTTTCTTCACGGCAGGTGTGTGCATCTTGCCGTGGATAGCTTTGCTTTGTGGAGGCTGGAAGATAACGTCCATTGTAACAAGTTGCCTTTTTGGTTTAACATTATTTTCCCCATTAGTTCTGCCGGAAAGTCCTCGTTGGCTACTAGCAAGAGGTCGAACTGATGATGCTGTGAATCAAGTGATGTCAATAGGAAAAATCAACAAGAAGACTGTGTCAAGGAAACTCATCGAAGAATTTAAGCTATCAATTTCGAAGTGTAGCGAGAATAAAGAAAAAACTACAATGATAGATATGATGAAGAGACCATTGCTACGAAGGGTGTTTATTTGCATGAGCCTCGTGTATTTTTGCTGTTATGTCGTGTACGACTCCTTGATAAGAACAATCAGTGATCTCAAATTCAACTTTTTCGTGTCATTCACGATTGTCTCCTTCACGGAATTCCCTTCGATTCTCTTATTGTCGTTTGTCTTAGATTTTATAGGACGAAAGAAACTAACAATACTTGCGATGTTTTTATGCGGAATATTTAGTTTCATCTTACCTTTTGTCGGTCATGGATGGCCGTCCGTAATGTGTGCAGTCGTCGCAAGATTCGTAGTAAATATGTCATTGAGCACTTGTATGCAATGGTCGGCCGAGATTTTGCCTGCTCCTATCCGAGGGTCAGGTACATCCATAATACACATATGTGGATATGTCGCTACTGTGATATCGCCATTTATACCGCACTTGACAGTTTTCGGCTTGTGGTTTCCAATGTTCGTTGTAGGATGCACATCAATATTAACGGCGGTTCTTTGTTTTGCATTACCGGAAACTGCTAAAGTCGAGATGCCTCAAACGTTTGACGATGCCGAGATTCTGATACGAAATCAAAGTATGTGGAAGATGAAAAAAAATGTGCGTGAACTCACAGGGCAGGTCCACACATCGTTCGAATTAAATTGA
Protein
MSENSKKDDPNIDQKVINECDSNKNVDYDQLLFSAGEFGLYQVYLFFLSGPFYICGAFSYFSQLFLTEASSDHWCWIPELENLTALERKRLAIPVDANNRFEYSRCSSYAANWSEVLIYSQKANRSWPIQSCQNGWEFNNTEIPYATITSDLGWVCEQDTHQATAQSVFFVGSILGGFIIGWIADRFGRLPAAMASNLIGCLAGIGSAFTKSFTTFTLCRFLMGMSYDNCMMMTYLLVLEYVAPKYRTVMANLAFSIFFTAGVCILPWIALLCGGWKITSIVTSCLFGLTLFSPLVLPESPRWLLARGRTDDAVNQVMSIGKINKKTVSRKLIEEFKLSISKCSENKEKTTMIDMMKRPLLRRVFICMSLVYFCCYVVYDSLIRTISDLKFNFFVSFTIVSFTEFPSILLLSFVLDFIGRKKLTILAMFLCGIFSFILPFVGHGWPSVMCAVVARFVVNMSLSTCMQWSAEILPAPIRGSGTSIIHICGYVATVISPFIPHLTVFGLWFPMFVVGCTSILTAVLCFALPETAKVEMPQTFDDAEILIRNQSMWKMKKNVRELTGQVHTSFELN

Summary

EMBL
KQ459463    KPJ00565.1    KQ461108    KPJ09098.1    ODYU01005057    SOQ45562.1    + More
NWSH01000582    PCG75510.1    JTDY01002009    KOB72344.1    NWSH01002435    PCG68306.1    JTDY01004795    KOB67750.1    BABH01011069    ODYU01007821    SOQ50911.1    AGBW02009123    OWR51601.1    KQ459593    KPI96286.1    KQ459875    KPJ19681.1    KQ971321    EFA00687.1    KPJ19680.1    KQ414596    KOC69917.1    KPI96288.1    KQ434878    KZC09853.1    GDUN01000921    JAN94998.1    KA648236    AFP62865.1    GL447693    EFN86109.1    CVRI01000042    CRK95636.1    ACPB03009635    ACPB03009636    ACPB03009637    ACPB03009638    ACPB03009639    GBBI01004623    JAC14089.1    KQ977004    KYN06495.1    KQ459602    KPI93618.1    GL887605    EGI70657.1    ADTU01004402    ADTU01004403    ADTU01004404    ADTU01004405    GFTR01007453    JAW08973.1    KQ980249    KYN17104.1    GECL01001415    JAP04709.1    GBXI01001560    JAD12732.1    GAMC01016163    JAB90392.1    JRES01000930    KNC27191.1    GDHF01022741    JAI29573.1    GFDL01001826    JAV33219.1    JRES01001371    KNC23290.1    GEZM01052731    JAV74290.1    KQ981276    KYN43599.1    AAAB01008960    EAA11678.4    NNAY01001101    OXU25136.1    KK107419    QOIP01000003    EZA51081.1    RLU24986.1    GAMD01001231    JAB00360.1    KQ460106    KPJ17832.1    GL444080    EFN61301.1    KQ982821    KYQ50181.1    GECZ01018651    JAS51118.1    AXCN02000878    CH954178    EDV51090.2    ODYU01004909    SOQ45269.1    KQ769818    OAD52819.1    KZ150153    PZC72816.1    GL768119    EFZ12162.1    DS235184    EEB13063.1    GEBQ01024996    JAT14981.1    NEVH01007822    PNF35272.1    OUUW01000009    SPP85099.1    KZ288416    PBC26059.1    CH902618    KPU78771.1    CH379069    KRT08150.1    KOC69919.1    CH963847    EDW72947.2    CM002912    KMY97849.1    AE014296    AAF50706.2    CM000159    EDW93588.2    CH933816    EDW17097.1    KQ976448    KYM85871.1    KK852417    KDR24330.1    KQ761655    OAD57197.1    KZC09851.1    GBYB01001152    JAG70919.1    CP012525    ALC43177.1    JXJN01011785    NNAY01003094    OXU19993.1    GDHF01014620    JAI37694.1    GDIP01169718    JAJ53684.1    CCAG010012933    KZ288431    PBC25815.1    UFQS01000037    UFQT01000037    SSW98016.1    SSX18402.1    SSW98015.1    SSX18401.1    CCAG010010771    LRGB01002915    KZS05483.1    KPI93620.1    GDIP01090230    JAM13485.1   
Pfam
PF00083   Sugar_tr        + More
PF07690   MFS_1
PF01663   Phosphodiest
Interpro
IPR036259   MFS_trans_sf        + More
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR011701   MFS       
IPR005829   Sugar_transporter_CS       
IPR017850   Alkaline_phosphatase_core_sf       
IPR002591   Phosphodiest/P_Trfase       
SUPFAM
SSF103473   SSF103473        + More
SSF53649   SSF53649       
Gene 3D
PDB
6N3I     E-value=1.13875e-09,     Score=153

Ontologies

Topology

Length:
573
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
213.29147
Exp number, first 60 AAs:
20.80879
Total prob of N-in:
0.09202
POSSIBLE N-term signal
sequence
outside
1  -  37
TMhelix
38  -  60
inside
61  -  166
TMhelix
167  -  184
outside
185  -  187
TMhelix
188  -  210
inside
211  -  216
TMhelix
217  -  239
outside
240  -  253
TMhelix
254  -  276
inside
277  -  360
TMhelix
361  -  383
outside
384  -  392
TMhelix
393  -  415
inside
416  -  421
TMhelix
422  -  444
outside
445  -  505
TMhelix
506  -  528
inside
529  -  573
 
 

Population Genetic Test Statistics

Pi
22.920795
Theta
18.02379
Tajima's D
0.748416
CLR
0.130418
CSRT
0.596220188990551
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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