Gene

KWMTBOMO00111

Pre Gene Modal

BGIBMGA002126

Annotation

Bmptp-Z_and_Bmap-A_fusion_protein_alpha_[Bombyx_mori]

Location

Bomo_Chr1(+):3376111-3429803      View in EpiBrowser

Full name

Protein apterous      

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 2.839

CDS

ATGGATTCGGCTTTTTATTTTAAGTTGTACGGACCCAAGCGCTGTGCTCGCTGCAACACGGTGATCTCAGCGTCAGAACTAGTTATGAGAGCACGGGACCTCGTTTTCCACGTGCATTGTTTCTCCTGCGCGTTATGCAATACGCCCCTAAATAAAGGCGACACGTACGGCATCAGAGACGCTGCCGTCTATTGCAGGCTTCATTACGAGACTATGCCAGAATACGGACCACATATGGCCGTGCCGGGTCCCCCGCAAATGTGTCCTGGTACGTACGCGGGACCGCCTCCGGGGGCCCACTATCCCCCGTACCCGTCGCCGGACTTCACCCGTGTCGACCCGGATGTGCAGAAAGGCCCGTATTTTAACGGCGCCGCAGCGCCCCCTCCGCGACAAAAAGGACGCCCACGAAAAAAAAAGCCAAAGGATCAAGACATCATGACCGCAAACCTGGATTTGAATCCCGATTATCTGGAGATGGGTTTCCGTGGCGGTGGTACCCTGGGCTCCACGTCCAGAACTAAGCGCATGCGTACGAGCTTCAAGCACCACCAACTGAGGACAATGAAGTCCTACTTCGCGATCAACCACAACCCTGACGCTAAAGATCTGAAGCAGCTCAGCCAAAAGACTGGACTGCCGAAACGTGTTCTGCAGGTATGGTTCCAGAACGCACGGGCGAAATGGCGGCGCATGGTCACGAAACAGGAGAACAAGATGTCGGACAAGTGCTCACCGGACGGCTCGCTCGAGATGGACATGTACCACGGGCCCATGGGCTCCATCCAGTCGTTGCCCCCGCACAGCCCGCCGTACAGTGTGATGGGAGGCCCGCCCAGTCCCAACTCCATGGAGTGTCCATAG

Protein

MDSAFYFKLYGPKRCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEYGPHMAVPGPPQMCPGTYAGPPPGAHYPPYPSPDFTRVDPDVQKGPYFNGAAAPPPRQKGRPRKKKPKDQDIMTANLDLNPDYLEMGFRGGGTLGSTSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSLPPHSPPYSVMGGPPSPNSMECP

Keywords

Alternative splicing   Complete proteome   Developmental protein   DNA-binding   Homeobox   LIM domain   Metal-binding   Nucleus   Reference proteome   Repeat   Zinc  

Feature

chain  Protein apterous
splice variant  In isoform B.

Uniprot

F2Z897   F2Z7K4   A0A212F9U6   F2Z899   A0A194Q4U6   A0A2A4JSA1   + More
C0KZ21   A0A182LMJ6   Q5TNA5   A0A182UW74   A0A182Y0H9   A0A1S4GZT4   A0A182Q8F4   A0A1Y1M8N4   A0A182J7A0   A0A067QVP0   A0A2J7QPF4   A0A154PPF4   A0A0L7RG67   A0A0M9A5M4   A0A1Y1M8M5   A0A195CEG3   A0A195FVD5   A0A195BK60   A0A151WK04   E2C2P5   A0A1B6E6D8   A0A151ITV8   A0A1B6LGL5   W8C2L2   A0A0A1XD63   A0A0A1WCZ9   A0A0E3D9W8   A0A1B0C958   A0A034WNH2   A0A0K8TYK7   A0A0J9TTY6   E1JGX9   A0A0Q5WD03   Q16Y22   T1J7L2   A0A336LI30   P29673-2   A0A0J9R7I1   E1JGY0  

Pubmed

21296154    22118469    26354079    20966253    12364791    25244985    + More
28004739    24845553    20798317    24495485    25830018    25348373    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    17510324    1349545    1524829    12537569   

EMBL

AB587301    BAK19079.1    AB543070    BAK19074.1    AGBW02009564    OWR50479.1    + More
AB587303    BAK19081.1    KQ459463    KPJ00562.1    NWSH01000713    PCG74646.1    FJ647811    ACN43341.1    AAAB01008984    EAL38999.2    AXCN02000674    AXCN02000675    GEZM01037474    JAV82054.1    KK852891    KDR14264.1    NEVH01012091    PNF30459.1    KQ434978    KZC13050.1    KQ414600    KOC69731.1    KQ435748    KOX76443.1    GEZM01037475    JAV82053.1    KQ977957    KYM98458.1    KQ981219    KYN44423.1    KQ976450    KYM85673.1    KQ983020    KYQ48192.1    GL452203    EFN77730.1    GEDC01003854    JAS33444.1    KQ980982    KYN10787.1    GEBQ01017141    JAT22836.1    GAMC01010582    GAMC01010581    JAB95974.1    GBXI01004978    JAD09314.1    GBXI01017458    JAC96833.1    KC978728    AHN15792.1    AJWK01001929    AJWK01001930    AJWK01001931    GAKP01003258    GAKP01003257    GAKP01003256    JAC55695.1    GDHF01033149    GDHF01024549    GDHF01013107    GDHF01004731    GDHF01000217    GDHF01000155    JAI19165.1    JAI27765.1    JAI39207.1    JAI47583.1    JAI52097.1    JAI52159.1    CM002911    KMY91650.1    AE013599    ACZ94338.1    CH954177    KQS71044.1    CH477527    EAT39512.1    JH431936    UFQS01000004    UFQT01000004    SSW96898.1    SSX17285.1    X65158    M92841    AY069815    BT005201    KMY91649.1    ACZ94339.1   

Proteomes

UP000007151    UP000053268    UP000218220    UP000075882    UP000007062    UP000075903    + More
UP000076408    UP000075886    UP000075880    UP000027135    UP000235965    UP000076502    UP000053825    UP000053105    UP000078542    UP000078541    UP000078540    UP000075809    UP000008237    UP000078492    UP000092461    UP000000803    UP000008711    UP000008820   

PRIDE

F2Z897    F2Z7K4    F2Z899    P29673   

Pfam

PF00046   Homeodomain        + More
PF00412   LIM
PF00102   Y_phosphatase

Interpro

IPR009057   Homeobox-like_sf        + More
IPR001781   Znf_LIM       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
IPR029021   Prot-tyrosine_phosphatase-like       
IPR000242   PTPase_domain       

SUPFAM

SSF46689   SSF46689        + More
SSF52799   SSF52799       

Gene 3D

3.90.190.10    

CDD

cd00086  homeodomain

ProteinModelPortal

F2Z897   F2Z7K4   A0A212F9U6   F2Z899   A0A194Q4U6   A0A2A4JSA1   + More
C0KZ21   A0A182LMJ6   Q5TNA5   A0A182UW74   A0A182Y0H9   A0A1S4GZT4   A0A182Q8F4   A0A1Y1M8N4   A0A182J7A0   A0A067QVP0   A0A2J7QPF4   A0A154PPF4   A0A0L7RG67   A0A0M9A5M4   A0A1Y1M8M5   A0A195CEG3   A0A195FVD5   A0A195BK60   A0A151WK04   E2C2P5   A0A1B6E6D8   A0A151ITV8   A0A1B6LGL5   W8C2L2   A0A0A1XD63   A0A0A1WCZ9   A0A0E3D9W8   A0A1B0C958   A0A034WNH2   A0A0K8TYK7   A0A0J9TTY6   E1JGX9   A0A0Q5WD03   Q16Y22   T1J7L2   A0A336LI30   P29673-2   A0A0J9R7I1   E1JGY0  

PDB

2DMQ     E-value=1.03153e-27,     Score=305

KEGG

100579139    no KO assigned | (RefSeq) Bmap-A; apterous A

GO

GO:0006355   GO:0043565   GO:0046872   GO:0005634   GO:0004725   GO:0003677   GO:0030182   GO:0045944   GO:0000977   GO:0000981   GO:0016021   GO:0010628   GO:0007450   GO:0007451   GO:0007526   GO:0060033   GO:0007399   GO:0007517   GO:0007419   GO:0007476   GO:0045165   GO:0048735   GO:0007411   GO:0007479   GO:0048190   GO:0036011   GO:0035218   GO:0008270   GO:0015074   GO:0048013   GO:0005003   GO:0005887   GO:0007169  

Subcellular location

Nucleus  

Length:

287

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00262

Exp number, first 60 AAs:

0.00262

Total prob of N-in:

0.01552

outside

1  -  287

 

 

Pi

23.991698

Theta

23.217227

Tajima's D

-1.118752

CLR

0.031177

CSRT

0.116794160291985

Interpretation

Uncertain