Gene

KWMTBOMO00085

Pre Gene Modal

BGIBMGA002110

Annotation

PREDICTED:_SET_and_MYND_domain-containing_protein_4_[Papilio_polytes]

Location

Bomo_Chr1(+):2489727-2502661      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.259

CDS

ATGCTGACTCTCTACTTGGAGAATTTCACGACGTTCTTCGATGATTTGCCCGATAAAATTCCGTATACGCTAAACAAGTCGCAGCTGCGTCTGTTCTCCGCTTCGCTGTTACTCCGTAGCCTGGGGCAGCTGGTCTGCAACGGACACGCGGCTTTGAGTCTGGCGACTATCGAAGAGGACGATGCGAAAGCCGGTAGGACGATATCTGAGCGAGAGGTGCGTCGCGCTACCGCCATTTATCCGTCGGCCGCCATGATGAATCACTCGTGTGACCCGAACATTGTAAATACTTTCTACAACAGTCGTCTGATAGTTCGTTGTTCGCGTGAGATGCCCGTGGCCACGGAAGTCTTCAACTGCTACGGTCCTCATCGTTCCAGAGAGACTACCGCCCAGAGACGAGCGCAACTCAGAGCTCAGTACATGTTCAACTGTATGTGCACCGCTTGCCTCGATACTGACCGGAAGGATTTTGTGTCTTTGTTCACCGCGTACGCTTGCCAGACGTGCAAAGGGCCGGTCCTGTGGTGCGGGAAGAGAGCCCTGTGTCAGCAATGCCACGCTGAACTGCAAATAGACCGAGCGTTGTCCGCTATAGAAAAAGCCGAAGACTTGATGGATCAAGCTGAACGGGCGGCCACAGTTGAGGAACGTTTCGAGAAGGCTCATGCGGCTTACAAAATGAAACAGCAAGTTTGGCATCGACACCACACGTCCCTGCGGGCTGCCGCCGATAGACTGGCCAGAATATACGCTGATTCCGGCGAGTTCAGTAGGAGCGTCGAGCTGATCAAGCAAAACATTCAGAGTTTGGAATATCAATTCGGATCGTTTAGCGTTGAGGTAGCGCATGAGCTAAGAAAACTATCGGACGTGATGCTAGAGAGACTCATCAACTTACCACAGAGCCCTGAATACAGGGAATGGTGTCTCGAAGCCCACAAGATCATAAAGAAATCCATACAGCTGATGGACTTGAACTACGGTTCCTGGGAGCCTTTGGTGAAGAGGCTCAAAGAACAAGAATCGATAGTGGCTTCACTCCTCGCCCATAGTCGAACCCCGGAACATTCGGACACGATACACAACAATCTGCACTACAACCTGAAGATATAA

Protein

MLTLYLENFTTFFDDLPDKIPYTLNKSQLRLFSASLLLRSLGQLVCNGHAALSLATIEEDDAKAGRTISEREVRRATAIYPSAAMMNHSCDPNIVNTFYNSRLIVRCSREMPVATEVFNCYGPHRSRETTAQRRAQLRAQYMFNCMCTACLDTDRKDFVSLFTAYACQTCKGPVLWCGKRALCQQCHAELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLARIYADSGEFSRSVELIKQNIQSLEYQFGSFSVEVAHELRKLSDVMLERLINLPQSPEYREWCLEAHKIIKKSIQLMDLNYGSWEPLVKRLKEQESIVASLLAHSRTPEHSDTIHNNLHYNLKI

Uniprot

A0A194PVF0   A0A194QUR8   A0A212EQL3   A0A2H1VMN2   A0A2W1BID7   A0A2J7PMQ2   + More
A0A2J7PMN5   A0A2J7PMQ7   A0A067QU06   K7JBH8   A0A2P8Y7Z3   T1I7K9   A0A1B6IY64   A0A1B6J3U9   A0A1B6FT30   A0A023EZ94   A0A154P9Z0   A0A195ENZ1   A0A195FLN3   A0A151XJ38   E9G026   A0A232ET23   A0A1B6MLQ4   A0A195BUX1   A0A158NEI7   A0A0A9XHT9   F4WVD9   A0A0A9XAI8   A0A0P5HMW4   A0A0P5RXU1   A0A0P5LEV7   A0A0P5RZQ2   A0A0P5RSJ9   A0A0P6H5T8   E2BLP0   A0A0P5SDY0   A0A0N0BI46   A0A0P6HK38   A0A0P6EDX5   A0A146LSV9   A0A0P5MVQ4   A0A164RP77   A0A0P6A672   A0A0P5W554   A0A1B6BYA9   A0A151IEA8   A0A0N8ATM2   A0A0P5GA71   A0A0P6AZ49   A0A0P5X3B1   A0A0P5V0B3   A0A0P5SQ35   A0A0P5HVK3   E0VEH0   R7U589   A0A0K2SV98   A0A0P5KCT0   A0A2R5L3T3   A0A0P5GIS5   A0A210Q399   A0A293LDJ9   A0A2C9LCP6   C3ZQQ3   A0A3L8DH39   B7P356   A0A131Y1B0   A0A1E1X532   A0A1V9XX30   A0A224Z6J7   A0A131Z3M5   A0A0P5Q3H3   A0A3M6T8L1   A0A1E1XM45   A0A026WXY1   A0A226EIN8   A7SM79   V5I287   A0A0P4WGQ5   V5HYS6   A0A2K6EVA3   X1XTV4   A0A2I0M1Z5   A0A093R3E5   T1IUA2   G3TEY9   A0A093FS76   A0A091T569   A0A094KH79   A0A091VGK1   A0A2R9BS95   A0A093CUS0   A0A0N8D9R2  

Pubmed

26354079    22118469    28756777    24845553    20075255    29403074    + More
25474469    21292972    28648823    21347285    25401762    21719571    20798317    26823975    20566863    23254933    28812685    15562597    18563158    30249741    28503490    28327890    28797301    26830274    30382153    29209593    24508170    17615350    25765539    23371554    22722832   

EMBL

KQ459593    KPI96739.1    KQ461108    KPJ09059.1    AGBW02013268    OWR43786.1    + More
ODYU01003134    SOQ41514.1    KZ150173    PZC72596.1    NEVH01023969    PNF17605.1    PNF17604.1    PNF17607.1    KK853018    KDR12448.1    AAZX01003889    AAZX01019964    PYGN01000819    PSN40378.1    ACPB03000186    GECU01015818    JAS91888.1    GECU01013896    JAS93810.1    GECZ01016424    JAS53345.1    GBBI01004636    JAC14076.1    KQ434844    KZC08204.1    KQ978625    KYN29622.1    KQ981490    KYN41167.1    KQ982080    KYQ60347.1    GL732528    EFX87160.1    NNAY01002343    OXU21510.1    GEBQ01003101    JAT36876.1    KQ976401    KYM92419.1    ADTU01013410    GBHO01026974    JAG16630.1    GL888387    EGI61760.1    GBHO01026973    JAG16631.1    GDIQ01227278    GDIQ01227277    JAK24447.1    GDIQ01094879    JAL56847.1    GDIQ01178297    GDIQ01176697    JAK73428.1    GDIQ01094881    JAL56845.1    GDIQ01096689    JAL55037.1    GDIQ01034015    JAN60722.1    GL449036    EFN83374.1    GDIQ01094880    JAL56846.1    KQ435735    KOX77184.1    GDIQ01026655    JAN68082.1    GDIQ01070344    JAN24393.1    GDHC01007756    JAQ10873.1    GDIQ01150513    JAL01213.1    LRGB01002176    KZS08827.1    GDIP01035296    JAM68419.1    GDIP01091387    JAM12328.1    GEDC01031343    GEDC01028325    GEDC01024336    GEDC01020734    GEDC01004590    GEDC01003971    GEDC01000924    GEDC01000193    JAS05955.1    JAS08973.1    JAS12962.1    JAS16564.1    JAS32708.1    JAS33327.1    JAS36374.1    JAS37105.1    KQ977871    KYM99194.1    GDIQ01244083    JAK07642.1    GDIQ01244081    JAK07644.1    GDIP01022369    JAM81346.1    GDIP01089947    JAM13768.1    GDIP01122678    JAL81036.1    GDIQ01101045    JAL50681.1    GDIQ01227276    JAK24449.1    DS235090    EEB11776.1    AMQN01001742    KB305005    ELU01530.1    HACA01000292    CDW17653.1    GDIQ01186108    JAK65617.1    GGLE01000007    MBY04133.1    GDIQ01244082    JAK07643.1    NEDP02005138    OWF43223.1    GFWV01002073    MAA26803.1    GG666662    EEN45099.1    QOIP01000008    RLU19493.1    ABJB011042961    DS626740    EEC01028.1    GEFM01003980    JAP71816.1    GFAC01004809    JAT94379.1    MNPL01002681    OQR78055.1    GFPF01011735    MAA22881.1    GEDV01003165    JAP85392.1    GDIQ01119616    JAL32110.1    RCHS01004086    RMX37735.1    GFAA01003285    JAU00150.1    KK107064    EZA60897.1    LNIX01000003    OXA56884.1    DS469706    EDO35173.1    GANP01002780    JAB81688.1    GDRN01063833    JAI64923.1    GANP01002781    JAB81687.1    ABLF02020813    AKCR02000048    PKK23708.1    KL436910    KFW93135.1    JH431524    KK395692    KFV57171.1    KK497641    KFQ66439.1    KL258782    KFZ58663.1    KK429851    KFQ88733.1    AJFE02057418    AJFE02057419    AJFE02057420    AJFE02057421    AJFE02057422    AJFE02057423    AJFE02057424    AJFE02057425    AJFE02057426    KL248909    KFV16664.1    GDIP01054951    JAM48764.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000235965    UP000027135    UP000002358    + More
UP000245037    UP000015103    UP000076502    UP000078492    UP000078541    UP000075809    UP000000305    UP000215335    UP000078540    UP000005205    UP000007755    UP000008237    UP000053105    UP000076858    UP000078542    UP000009046    UP000014760    UP000242188    UP000076420    UP000001554    UP000279307    UP000001555    UP000192247    UP000275408    UP000053097    UP000198287    UP000001593    UP000233160    UP000007819    UP000053872    UP000007646    UP000240080   

Pfam

PF00856   SET        + More
PF01753   zf-MYND
PF13181   TPR_8
PF10516   SHNi-TPR

Interpro

IPR002893   Znf_MYND        + More
IPR011990   TPR-like_helical_dom_sf       
IPR001214   SET_dom       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR019544   Tetratricopeptide_SHNi-TPR_dom       
IPR036280   Multihaem_cyt_sf       

SUPFAM

SSF48452   SSF48452        + More
SSF48695   SSF48695       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A194PVF0   A0A194QUR8   A0A212EQL3   A0A2H1VMN2   A0A2W1BID7   A0A2J7PMQ2   + More
A0A2J7PMN5   A0A2J7PMQ7   A0A067QU06   K7JBH8   A0A2P8Y7Z3   T1I7K9   A0A1B6IY64   A0A1B6J3U9   A0A1B6FT30   A0A023EZ94   A0A154P9Z0   A0A195ENZ1   A0A195FLN3   A0A151XJ38   E9G026   A0A232ET23   A0A1B6MLQ4   A0A195BUX1   A0A158NEI7   A0A0A9XHT9   F4WVD9   A0A0A9XAI8   A0A0P5HMW4   A0A0P5RXU1   A0A0P5LEV7   A0A0P5RZQ2   A0A0P5RSJ9   A0A0P6H5T8   E2BLP0   A0A0P5SDY0   A0A0N0BI46   A0A0P6HK38   A0A0P6EDX5   A0A146LSV9   A0A0P5MVQ4   A0A164RP77   A0A0P6A672   A0A0P5W554   A0A1B6BYA9   A0A151IEA8   A0A0N8ATM2   A0A0P5GA71   A0A0P6AZ49   A0A0P5X3B1   A0A0P5V0B3   A0A0P5SQ35   A0A0P5HVK3   E0VEH0   R7U589   A0A0K2SV98   A0A0P5KCT0   A0A2R5L3T3   A0A0P5GIS5   A0A210Q399   A0A293LDJ9   A0A2C9LCP6   C3ZQQ3   A0A3L8DH39   B7P356   A0A131Y1B0   A0A1E1X532   A0A1V9XX30   A0A224Z6J7   A0A131Z3M5   A0A0P5Q3H3   A0A3M6T8L1   A0A1E1XM45   A0A026WXY1   A0A226EIN8   A7SM79   V5I287   A0A0P4WGQ5   V5HYS6   A0A2K6EVA3   X1XTV4   A0A2I0M1Z5   A0A093R3E5   T1IUA2   G3TEY9   A0A093FS76   A0A091T569   A0A094KH79   A0A091VGK1   A0A2R9BS95   A0A093CUS0   A0A0N8D9R2  

PDB

3OXG     E-value=5.18834e-10,     Score=154

KEGG

101746452    no KO assigned | (RefSeq) SET and MYND domain-containing protein 4

GO

GO:0016021   GO:0008168   GO:0005515   GO:0008270   GO:0007017   GO:0005200   GO:0005525   GO:0048013   GO:0005003   GO:0005887   GO:0007169  

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00917999999999999

Exp number, first 60 AAs:

0.00821

Total prob of N-in:

0.00407

outside

1  -  371

 

 

Pi

17.385959

Theta

24.15345

Tajima's D

-1.291867

CLR

0.159142

CSRT

0.0872456377181141

Interpretation

Uncertain