SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00082
Pre Gene Modal
BGIBMGA009030
Annotation
PREDICTED:_uncharacterized_protein_LOC105842396_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.773 Mitochondrial   Reliability : 1.746
 

Sequence

CDS
ATGGCAAAGTGTGGAGCATGTGGAAAATTCTTGTCAACCGCGGACTGTGCGCGATGTAGTAAATGCAGTGACAATTTTCATAAAGGATGCGTGGCAATCCCTTCTACGGGAGTAGCGCCTCGGGGCTGGATCTGCCCGAGTTGCTTAGCGAAGGTACCTCGTGGGGATAATGCTGCAACTCCTGTGCGAGGGTTGACAGTTGTCGGGGTGCATCAGACTTCAAACGAGTGCGATGTTGATGCAGACACGATGAATCGGTCGCTGGAGTCCCATGTCGACCTTGGCTTAGAAATTCGATCTTTTAAGGATGAGCTGGTGGGCCTAAGAACTGACTTAAGAAATTGCCGAAAAGATATCGCTGAGTTTAAGGAGCTTCTCCAGTCCTGTCATGGACGTATCGACGCGGTGGAAGCCCGTGTGCTGGGTCTTGAGGCTCGCCTAGCGGAGATCGTCCCAACAGTAGCAGCTTCTGACTTGGATTCCACGGTGGCTGAGCTTCGCATGCAGCTGCGTGAACGCGACCAGGACTTGCTCAGGAACGATATTGACATAATTGGTTTGCCGGAAGTCCGTGAAGAAAGCGCTTGTCATTTAGTCCAGGTTGTGGCTGTAAAACTAGAAGTAAAACTTGACGTGTGCGATATAGTCCACGCGGAGCGGATTGGTGCAGTAAGACGCAACTTCACTGAGGGCGACGAGAATCGTCCTCGTATACTATCAGTACGACTGGCTCGTCGCTCGGTTCGCGATGCACTATTGAAGGGAGCCCGCGTGCGCCGTAACCTCTCCACTACTGATTTAGATGTACCTGGCCCCGTCCGTACTGTATATTTAAATGAACGTTTGTCCGCATATAACCGCCAACTGTTTGGTACTGCCCGTCAAAAGGGAAAAGACAAGGGCTGGAAGTATGTCTGGACCAAGGACGGACGAATTTACATTCGTCGTGGTGATGGTACTCCTGCGCTTAGAATCAGAGTTCAGGCCGACTTGAAGAAGCATTTTGGCCCAGATATAGTTTGA
Protein
MAKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAATPVRGLTVVGVHQTSNECDVDADTMNRSLESHVDLGLEIRSFKDELVGLRTDLRNCRKDIAEFKELLQSCHGRIDAVEARVLGLEARLAEIVPTVAASDLDSTVAELRMQLRERDQDLLRNDIDIIGLPEVREESACHLVQVVAVKLEVKLDVCDIVHAERIGAVRRNFTEGDENRPRILSVRLARRSVRDALLKGARVRRNLSTTDLDVPGPVRTVYLNERLSAYNRQLFGTARQKGKDKGWKYVWTKDGRIYIRRGDGTPALRIRVQADLKKHFGPDIV

Summary

EMBL
BABH01012931    BABH01012932    ODYU01011375    SOQ57082.1    LADJ01030744    KPJ21224.1    + More
NWSH01000010    PCG80924.1    KQ461191    KPJ07137.1    JTDY01001653    KOB73242.1    ODYU01010286    SOQ55282.1    NWSH01001817    PCG70031.1    NWSH01001982    PCG69514.1    JTDY01000042    KOB79218.1    JTDY01017010    KOB51869.1    NWSH01008646    PCG62462.1    KZ149908    PZC78213.1    JTDY01009085    KOB64118.1    JTDY01000562    KOB76673.1    ODYU01004417    SOQ44266.1    KZ150150    PZC72841.1    ODYU01010507    SOQ55661.1    JTDY01002313    KOB71687.1    ODYU01008890    SOQ52873.1    NWSH01001505    PCG71029.1    NWSH01000125    PCG79301.1    JTDY01007941    KOB64843.1    NWSH01005158    PCG64392.1    NWSH01003975    PCG65605.1    JTDY01003157    KOB70048.1    JTDY01000739    KOB76046.1    JTDY01002139    KOB72021.1    NWSH01002711    PCG67639.1    NWSH01002730    PCG67615.1    JTDY01005149    KOB67319.1    JTDY01002895    KOB70525.1    JTDY01014864    KOB51988.1    JTDY01006205    KOB66199.1    NWSH01002492    PCG68176.1    JTDY01017442    KOB51849.1    JTDY01000181    KOB78416.1    JTDY01000729    KOB76082.1    KZ150197    PZC72320.1    JTDY01006445    KOB66006.1    JTDY01007036    KOB65506.1    JTDY01003432    KOB69564.1    JTDY01000624    KOB76430.1    JTDY01000273    KOB77970.1    JTDY01000945    KOB75331.1    JTDY01000032    KOB79297.1    JTDY01006255    KOB66167.1    GDQN01006224    JAT84830.1    GDQN01009099    JAT81955.1    JTDY01009015    KOB64201.1    JTDY01009571    KOB63316.1    BABH01014938    GDQN01007706    JAT83348.1    JTDY01015045    KOB51976.1    JTDY01001455    KOB73826.1    ODYU01007238    SOQ49844.1    GDQN01000556    JAT90498.1    ACPB03014935    KOB70049.1    ACPB03011237    ACPB03024613    ACPB03027065    KQ459054    KPJ03878.1    ODYU01007128    SOQ49629.1    NWSH01000826    PCG73989.1    ACPB03021827    ACPB03014947    NWSH01007563    PCG62908.1    JTDY01008292    KOB64643.1    JTDY01009133    KOB64064.1    KQ460397    KPJ15249.1    JTDY01004632    KOB67925.1    NWSH01005418    PCG64228.1    KQ459592    KPI96861.1    ACPB03011976    JTDY01002966    KOB70404.1    JTDY01007401    KOB65231.1    JTDY01010989    KOB57787.1    GEZM01021253    JAV89053.1    GBHO01033077    JAG10527.1    NWSH01000216    PCG78307.1   
Pfam
PF03258   Baculo_FP        + More
PF00628   PHD
PF00076   RRM_1
Interpro
IPR019787   Znf_PHD-finger        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR004941   Baculo_FP       
IPR004244   Transposase_22       
IPR001841   Znf_RING       
IPR002219   PE/DAG-bd       
IPR027267   AH/BAR_dom_sf       
IPR036427   Bromodomain-like_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR034209   PUF60_RRM1       
IPR018527   Rubredoxin_Fe_BS       
SUPFAM
SSF57903   SSF57903        + More
SSF103657   SSF103657       
SSF56219   SSF56219       
SSF54928   SSF54928       
PDB
5V9T     E-value=0.0727359,     Score=83

Ontologies

Topology

Length:
340
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00158
Exp number, first 60 AAs:
0.00158
Total prob of N-in:
0.02355
outside
1  -  340
 
 

Population Genetic Test Statistics

Pi
6.740853
Theta
15.924739
Tajima's D
-1.533112
CLR
0.150425
CSRT
0.0528473576321184
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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