Gene

KWMTBOMO00079  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002105

Annotation

PREDICTED:_protein_RCC2_homolog_[Amyelois_transitella]

Location

Bomo_Chr1(+):2293427-2307813      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.43 Nuclear   Reliability : 1.076

CDS

ATGTCAACGGCAAGTCGTAAGCGTCCACTGCCAAGTTCTAGTAACCGTGGAAAGGTCTCAAGAAGGAAGAAACCTCTGGTCTCTGAAGATGAGGATAGTAATGATTCAACTACTTCCAATCCACCAGCTGAACAGTCAAAACCTTCAACACCGGAGCCTGAAGAATGTACCACTAAATTACCTGAGGAACTACTGAAGACTTTCTACAAGACTCCTGGTGTTTTGATGATAGCCGGTCTGGTGTCATGGGATCTTACCGCCAGGAGGGACAACAATCCAACCAAACGTACCCACCCGAACCTTTATACATTTCATAAGTTCACCGATCGTCGGTACCGACTTATAGTCAGTGGGTGCACTGCAGGACATTCAGTTTTGGTGTCCGAAGAGGGAGAAGCCTACACGTTTGGTCGCAATGCGTGTGGTCAACTCGGCTTCGGAGACACGGTGACACGGAGCGTTCCCGAGCTAGTACCAGAGTTGAAGGGCAAGAACATCATCCACGCCGCAGTTGGGAGACACCATACATTGTTTGTGACCGACACTGGCTGTGTATACGCTTGCGGGGACAACAAGAGCGGTCAGTGCGGACTTGGGAATACAACACCTCAGATCTTGAAACCAACTCGGATTAAATACAATGGAACACCGATCGTGAAAGTAGGATGCGGTGCCGAGTTCTCTATGATACTTGACTGCAACGGGAACTTGCATTCGTTTGGAATGCCCGAGTATGGACAACTAGGTCACAACACTGATGGCAAGTACTTTGTGACTTCGACTAAACTCTCGTTCCACTTCGAGACTATTCCAAAGCAGATCACTCTATACATTCAGAAGTCGAAAGATGGCTACATAACACCTGTCAAAGATGTCACAATTGTCGATCTGTCATGCGGGAATAATCATACAGTAGCAATAGACTCAATGAAGCGGGCCTTCAGTTGGGGTTTTGGTGGTTTCGGTCGCCTCGGTCACGCTGAACAAAAGGACGAGAACGTTCCGAGGCTGATCAAATACTTTGATACTGTGGGCAGAGGCGTTCGGTCAGTTCATTGCGGTGGTACTTACAGTCTTGCAGTCAATGACCAGGGTGCCCTGTTTATGTTCGGTCAAACAAAACGGACTGGAGAGGCCAACATGTACCCAAAACCGGTCCACGATCTCACCGGCTGGAACATAAAAAGTGTCGGCACAAGTAACACATCCATAGTAATAGCAGCGGACGACTCACTGATTGCTTGGGGTGTATCACCAACTTATGGGGAATTGGGCATGGGCGAGATAAATAAGTCTACAGCCAAGCCTAAAGAAGTGAGCCGTATGGATAGCCTCGGCATAACCCAGGTCGCCATGGGTTATTCTCACACACTCCTCCTGTGCGATAACAATATAGAAGAAGTTAAGCAGAAACTGGACACTATCCCCGCATTCGAACCATAG

Protein

MSTASRKRPLPSSSNRGKVSRRKKPLVSEDEDSNDSTTSNPPAEQSKPSTPEPEECTTKLPEELLKTFYKTPGVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNNIEEVKQKLDTIPAFEP

Uniprot

H9IXX2   A0A212EQP8   A0A2A4JMU6   A0A2W1BCZ5   A0A2A4JLM3   A0A194PUS6   + More
T1PG16   A0A0L0CA39   A0A0T6AXU0   A0A1Q3G133   A0A182Q0G6   A0A182MQX3   A0A182XWG2   A0A182RN75   A0A182NDS9   A0A182VYG5   A0A182VAW5   A0A182XGL5   Q7QK48   A0A182HZR1   A0A182P4E9   A0A1A9W855   A0A084WS97   A0A182J136   A0A336LDM1   T1E9G2   A0A182F6Z3   A0A336KKI9   A0A0M4EDW3   A0A0K8UD50   A0A034VCN1   A0A2M4ASS1   W5JNF3   B4MUX7   B4LRL4   A0A1I8NV63   A0A0P9A4H8   A0A0A1X5K4   A0A1W4UYH2   D1GZ39   A0A1J1HZ06   B4KL71   D1GYW1   B4JB13   D1GZ12   B3MKJ0   D1GYV6   Q9VMI5   B4I1Q4   B4Q4H8   B4NZR0   D1GYV8   A0A0P6IYY1   Q16YE0   A0A023ESV8   A0A1A9UNI9   B3N9R6   W8BML1   A0A1W4W604   A0A3B0JVH9   A0A0R3NQR7   Q29PN4   B4G6J3   A0A1Y1LGW8   A0A1B0CHF5   U5ESL4   N6TRV6   A0A182TSS5   A0A1A9YF04   A0A0N8E8F7   A0A182KG17   A0A1B0D7K5   A0A1B0A9Q3   Q16I30   Q16I29   A0A195D4A9   A0A088AW62   A0A2J7QG43   A0A2A3E0I3   A0A195E2F8   A0A0N0BBA9   A0A195AV83   A0A158NHI8   E1ZYD4   A0A195FX63   E9I867   F4WVQ7   A0A151XF72   A0A182H8J3   A0A0J7NSM2   E2B3K5   A0A026WVQ3   A0A3B0KQF8   E0VFE2   A0A067QVR0   A0A0L7R0B5   A0A0C9RC59   A0A154P7N4   R4FQE5  

Pubmed

19121390    22118469    28756777    26354079    25315136    26108605    + More
25244985    12364791    14747013    17210077    24438588    25348373    20920257    23761445    17994087    18057021    25830018    10731132    12537568    12537572    12537573    12537574    16110336    16951084    17569856    17569867    19126864    26109357    26109356    22936249    17550304    17510324    24945155    24495485    15632085    28004739    23537049    21347285    20798317    21282665    21719571    26483478    24508170    30249741    20566863    24845553   

EMBL

BABH01015770    AGBW02013268    OWR43781.1    NWSH01001081    PCG72720.1    KZ150442    + More
PZC70856.1    PCG72719.1    KQ459593    KPI96738.1    KA647762    AFP62391.1    JRES01000699    KNC29080.1    LJIG01022550    KRT79983.1    GFDL01001532    JAV33513.1    AXCN02002401    AXCM01006831    AAAB01008799    EAA03694.2    APCN01002002    ATLV01026407    KE525413    KFB53091.1    UFQS01003592    UFQT01003592    SSX15780.1    SSX35128.1    GAMD01001382    JAB00209.1    UFQS01000219    UFQT01000219    SSX01540.1    SSX21920.1    CP012523    ALC38167.1    GDHF01027712    GDHF01019947    JAI24602.1    JAI32367.1    GAKP01018718    GAKP01018715    JAC40234.1    GGFK01010489    MBW43810.1    ADMH02001050    ETN64309.1    CH963857    EDW76322.1    CH940649    EDW63609.1    KRF81187.1    CH902620    KPU73465.1    GBXI01008267    GBXI01001711    GBXI01000549    JAD06025.1    JAD12581.1    JAD13743.1    FN546778    CBE67077.1    CVRI01000037    CRK93336.1    CH933807    EDW11732.1    FN546700    CBE66999.1    CH916368    EDW02883.1    FN546751    CBE67050.1    FN546696    CBE66995.1    EDV31543.1    FN546695    FN546698    FN546699    FN546701    FN546702    FN546703    FN546704    CBE66994.1    CBE66997.1    CBE66998.1    CBE67000.1    CBE67001.1    CBE67002.1    CBE67003.1    AE014134    AY058682    AM294309    AM294310    AM294311    AM294312    AM294313    AM294314    AM294315    AM294316    AM294317    AM294318    FM245376    FM245377    FM245378    FM245379    FM245380    FM245381    FM245382    FM245383    FM245384    FM245385    FM245386    FM245387    AAF52332.1    AAL13911.1    CAL26239.1    CAL26240.1    CAL26241.1    CAL26242.1    CAL26243.1    CAL26244.1    CAL26245.1    CAL26246.1    CAL26247.1    CAL26248.1    CAR93302.1    CAR93303.1    CAR93304.1    CAR93305.1    CAR93306.1    CAR93307.1    CAR93308.1    CAR93309.1    CAR93310.1    CAR93311.1    CAR93312.1    CAR93313.1    CH480820    EDW54461.1    CM000361    CM002910    EDX03905.1    KMY88451.1    CM000157    EDW88844.1    KRJ98052.1    FN546697    CBE66996.1    GDIQ01002326    JAN92411.1    CH477518    EAT39629.1    GAPW01001213    JAC12385.1    CH954177    EDV58561.1    KQS70443.1    GAMC01006553    JAC00003.1    OUUW01000010    SPP86107.1    CH379058    KRT03321.1    EAL34258.2    CH479180    EDW28218.1    GEZM01060189    JAV71205.1    AJWK01012314    AJWK01012315    AJWK01012316    GANO01002297    JAB57574.1    APGK01021746    APGK01021747    APGK01021748    APGK01021749    APGK01021750    KB740358    KB631949    ENN80813.1    ERL87419.1    GDIQ01051612    JAN43125.1    AJVK01026981    CH478115    EAT33912.1    EAT33913.1    KQ976870    KYN07723.1    NEVH01014835    PNF27565.1    KZ288481    PBC25255.1    KQ979763    KYN19261.1    KQ436240    KOX67331.1    KQ976737    KYM75935.1    ADTU01015836    GL435204    EFN73833.1    KQ981208    KYN44907.1    GL761471    EFZ23233.1    GL888393    EGI61727.1    KQ982194    KYQ59036.1    JXUM01118580    JXUM01118581    KQ566202    KXJ70324.1    LBMM01001994    KMQ95430.1    GL445346    EFN89757.1    KK107109    QOIP01000008    EZA59179.1    RLU19623.1    SPP86108.1    DS235111    EEB12098.1    KK853191    KDR10021.1    KQ414670    KOC64290.1    GBYB01010697    JAG80464.1    KQ434832    KZC07882.1    GAHY01000439    JAA77071.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000095301    UP000037069    + More
UP000075886    UP000075883    UP000076408    UP000075900    UP000075884    UP000075920    UP000075903    UP000076407    UP000007062    UP000075840    UP000075885    UP000091820    UP000030765    UP000075880    UP000069272    UP000092553    UP000000673    UP000007798    UP000008792    UP000095300    UP000007801    UP000192221    UP000183832    UP000009192    UP000001070    UP000000803    UP000001292    UP000000304    UP000002282    UP000008820    UP000078200    UP000008711    UP000192223    UP000268350    UP000001819    UP000008744    UP000092461    UP000019118    UP000030742    UP000075902    UP000092443    UP000075881    UP000092462    UP000092445    UP000078542    UP000005203    UP000235965    UP000242457    UP000078492    UP000053105    UP000078540    UP000005205    UP000000311    UP000078541    UP000007755    UP000075809    UP000069940    UP000249989    UP000036403    UP000008237    UP000053097    UP000279307    UP000009046    UP000027135    UP000053825    UP000076502   

PRIDE

H9IXX2   

Pfam

PF00415   RCC1

Interpro

IPR000408   Reg_chr_condens        + More
IPR009091   RCC1/BLIP-II       

SUPFAM

SSF50985   SSF50985       

Gene 3D

2.130.10.30    

ProteinModelPortal

H9IXX2   A0A212EQP8   A0A2A4JMU6   A0A2W1BCZ5   A0A2A4JLM3   A0A194PUS6   + More
T1PG16   A0A0L0CA39   A0A0T6AXU0   A0A1Q3G133   A0A182Q0G6   A0A182MQX3   A0A182XWG2   A0A182RN75   A0A182NDS9   A0A182VYG5   A0A182VAW5   A0A182XGL5   Q7QK48   A0A182HZR1   A0A182P4E9   A0A1A9W855   A0A084WS97   A0A182J136   A0A336LDM1   T1E9G2   A0A182F6Z3   A0A336KKI9   A0A0M4EDW3   A0A0K8UD50   A0A034VCN1   A0A2M4ASS1   W5JNF3   B4MUX7   B4LRL4   A0A1I8NV63   A0A0P9A4H8   A0A0A1X5K4   A0A1W4UYH2   D1GZ39   A0A1J1HZ06   B4KL71   D1GYW1   B4JB13   D1GZ12   B3MKJ0   D1GYV6   Q9VMI5   B4I1Q4   B4Q4H8   B4NZR0   D1GYV8   A0A0P6IYY1   Q16YE0   A0A023ESV8   A0A1A9UNI9   B3N9R6   W8BML1   A0A1W4W604   A0A3B0JVH9   A0A0R3NQR7   Q29PN4   B4G6J3   A0A1Y1LGW8   A0A1B0CHF5   U5ESL4   N6TRV6   A0A182TSS5   A0A1A9YF04   A0A0N8E8F7   A0A182KG17   A0A1B0D7K5   A0A1B0A9Q3   Q16I30   Q16I29   A0A195D4A9   A0A088AW62   A0A2J7QG43   A0A2A3E0I3   A0A195E2F8   A0A0N0BBA9   A0A195AV83   A0A158NHI8   E1ZYD4   A0A195FX63   E9I867   F4WVQ7   A0A151XF72   A0A182H8J3   A0A0J7NSM2   E2B3K5   A0A026WVQ3   A0A3B0KQF8   E0VFE2   A0A067QVR0   A0A0L7R0B5   A0A0C9RC59   A0A154P7N4   R4FQE5  

PDB

5GWN     E-value=7.53452e-118,     Score=1085

KEGG

101745928    no KO assigned | (RefSeq) protein RCC2 homolog

GO

GO:0034260  

Length:

480

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0850700000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00955

outside

1  -  480

 

 

Pi

23.29931

Theta

17.168553

Tajima's D

-1.534426

CLR

0.098853

CSRT

0.0545472726363682

Interpretation

Uncertain