Gene

KWMTBOMO00075

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(+):2238887-2242248      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.432

CDS

ATGATTACACCAATTATTCAAAATCAACACTGTCGGTCCGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCTTGCGGCCCGGATTCAACTCCATCCCCCGAGGATACCGTCGAATCCATAAACATCTTCACTGATCACGTCTCGACGGCGATCATAAGATCCTCGAAACAAGTTGATGTGGAGGACTGCTTCCACCGCATCAGACTTTCCCCCGAACTTAGGGACCTCGTTAGAATTAGAAACGCGGCAATCCGGGCCTACGATCGATATCCCACGGATTCAAACCGGACTCGGATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTAAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAGAAGAACTCGCGCCCACTCACCAAGCATACTGGCAACTAGCTAGGACCCTCAAGTCCGAAACTATAGCCACTATGCCGCCTCTCGTACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTACAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAATTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAACAAAATTCTGATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGGCTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCTCTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGAGGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCGGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTAGGCGCGTCAATACCCCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCACTCACTTAAAGTCATTCCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGACCCGCCCGATCCACTAACGGTGGATCGGGCTTTTAGACTTCGCCAAGACTACACTATAGACAAATGA

Protein

MITPIIQNQHCRSVDWKKLGTCLADTAPPILPCGPDSTPSPEDTVESINIFTDHVSTAIIRSSKQVDVEDCFHRIRLSPELRDLVRIRNAAIRAYDRYPTDSNRTRMRRLQREVKSRLSDARNENWDSYLEELAPTHQAYWQLARTLKSETIATMPPLVRPSGQPPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFAEDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVDRAFRLRQDYTIDK

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A224XF24   A0A023EYS8   A0A023EZE6   X1WLB2   A0A2S2QEE0   A0A2S2PPK8   A0A2H8U0H5   A0A2J7R7D0   J9KC83   A0A2J7R8R8   A0A2M4BEF4   A0A2S2Q383   A0A2M4BEZ9   A0A1Y1LKN6   A0A2J7PDM0   A0A2M4BDA5   A0A2S2NGV8   A0A2M4BD62   A0A2M4BD66   A0A023F6S4   J9M522   A0A2S2Q352   A0A2J7PVX3   J9KCZ4   A0A0L0CBP5   A0A2S2P698   A0A2M4CV42   A0A2M4CV52   A0A2S2N629   A0A087UGF5   A0A2M4BD67   A0A1L8DIZ6   X1WNI2   A0A2J7RS81   A0A2M4BDV6   A0A2J7RB54   A0A2J7QB68   A0A2J7RIW7   A0A224X6S1   A0A2J7RM10   A0A2J7R4B7   A0A0C9RJA4   A0A2J7Q4F7   A0A2S2N814   A0A2S2Q7E7   A0A0J7K4E0   A0A224XB44   A0A2J7QUJ9   A0A2J7Q627   A0A2J7PMP6   A0A2J7Q059   A0A1Y1KFR3   X1WZH0   A0A2J7PQB5   A0A2J7Q0Q6   A0A2J7RPU2   J9LC21   D7GYA5   A0A2J7PMP9   A0A2J7R2E1   K7IN67   A0A224X6U5   A0A1B6EGD8  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
8387152    30086797    25474469    26108605    20075255   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    S59870    AAB26437.2    RPOV01000134    RPJ78669.1    GFTR01008038    JAW08388.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GGMR01018716    MBY31335.1    GFXV01007093    MBW18898.1    NEVH01006736    PNF36716.1    ABLF02033757    NEVH01006721    PNF37225.1    GGFJ01002256    MBW51397.1    GGMS01002992    MBY72195.1    GGFJ01002257    MBW51398.1    GEZM01053022    JAV74219.1    NEVH01026386    PNF14434.1    GGFJ01001842    MBW50983.1    GGMR01003407    MBY16026.1    GGFJ01001843    MBW50984.1    GGFJ01001844    MBW50985.1    GBBI01001646    JAC17066.1    ABLF02024246    GGMS01002955    MBY72158.1    NEVH01020940    PNF20481.1    ABLF02008463    JRES01000644    KNC29657.1    GGMR01012305    MBY24924.1    GGFL01005012    MBW69190.1    GGFL01004957    MBW69135.1    GGMR01000005    MBY12624.1    KK119692    KFM76444.1    GGFJ01001858    MBW50999.1    GFDF01007661    JAV06423.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01000269    PNF43694.1    GGFJ01001857    MBW50998.1    NEVH01005938    PNF38077.1    NEVH01016302    PNF25823.1    NEVH01003017    PNF40781.1    GFTR01008271    JAW08155.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    GBYB01008290    JAG78057.1    NEVH01018383    PNF23463.1    GGMR01000676    MBY13295.1    GGMS01004444    MBY73647.1    LBMM01014395    KMQ85192.1    GFTR01008262    JAW08164.1    NEVH01010546    PNF32261.1    NEVH01017542    PNF24034.1    NEVH01023962    PNF17612.1    NEVH01020071    PNF21969.1    GEZM01084969    JAV60363.1    ABLF02034467    NEVH01022639    PNF18527.1    NEVH01019964    PNF22161.1    NEVH01001355    PNF42855.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    KQ973363    EFA13335.2    NEVH01023961    PNF17613.1    NEVH01007838    PNF34986.1    GFTR01008251    JAW08175.1    GEDC01000337    JAS36961.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000037069    UP000054359    + More
UP000036403    UP000002358   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A224XF24   A0A023EYS8   A0A023EZE6   X1WLB2   A0A2S2QEE0   A0A2S2PPK8   A0A2H8U0H5   A0A2J7R7D0   J9KC83   A0A2J7R8R8   A0A2M4BEF4   A0A2S2Q383   A0A2M4BEZ9   A0A1Y1LKN6   A0A2J7PDM0   A0A2M4BDA5   A0A2S2NGV8   A0A2M4BD62   A0A2M4BD66   A0A023F6S4   J9M522   A0A2S2Q352   A0A2J7PVX3   J9KCZ4   A0A0L0CBP5   A0A2S2P698   A0A2M4CV42   A0A2M4CV52   A0A2S2N629   A0A087UGF5   A0A2M4BD67   A0A1L8DIZ6   X1WNI2   A0A2J7RS81   A0A2M4BDV6   A0A2J7RB54   A0A2J7QB68   A0A2J7RIW7   A0A224X6S1   A0A2J7RM10   A0A2J7R4B7   A0A0C9RJA4   A0A2J7Q4F7   A0A2S2N814   A0A2S2Q7E7   A0A0J7K4E0   A0A224XB44   A0A2J7QUJ9   A0A2J7Q627   A0A2J7PMP6   A0A2J7Q059   A0A1Y1KFR3   X1WZH0   A0A2J7PQB5   A0A2J7Q0Q6   A0A2J7RPU2   J9LC21   D7GYA5   A0A2J7PMP9   A0A2J7R2E1   K7IN67   A0A224X6U5   A0A1B6EGD8  

PDB

6AR3     E-value=0.00697531,     Score=95

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

724

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.725799999999998

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02005

outside

1  -  724

 

 

Pi

2.723148

Theta

18.234108

Tajima's D

-0.98333

CLR

0

CSRT

0.134793260336983

Interpretation

Uncertain