Gene

KWMTBOMO00074

Pre Gene Modal

BGIBMGA012392

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr1(-):2229722-2232776      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.611

CDS

ATGAATGTGGAAGGATTTAGAGGAAGAGGTAGACCTAAGAAGAAATGGATGGATTGTGTGAAAGACGATATGGGTAGGAGGGGAGTGAGCGAAGAAATGGTATATGATAGAAGAGTATGGAAGGAGCAAACATGTTGCGTCGACCCCAGCAATGTCAGGGGCCTACATAGCAACCTTGACGCCGTACACCACCACCTTGAGACGGCGCAGCCTGCCCTGCTTTTTTTAACGGAGACGCAGATATCTGCTCCGGATGATACCTCATACCTTGAGTACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGCGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTTCGGGGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGACCACGGGGGCCGTAGCCGAATCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGTTTGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAGCCTTCTTTGTTGGACCTTCTGCTGACCACAGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCGCTTGGATCGTCTGATCACTGCCTTATTCGTGCTGCCATACCACTCTCTCGTCCTGATCGTCGAACGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGATTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGTTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCCTCCTCTGAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACGCCTCAAGCGGTCCGCATACGTGGCATGGGATAATGCCAGGAGACGTCGGGATCCTAACATCTCAGGGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTCTAG

Protein

MNVEGFRGRGRPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEQTCCVDPSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSLLWLRVDHGGRSRIYACLYRSHSSDAGSALFEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAIPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKV

Uniprot

Q6UV17   A0A2H1VKB9   A0A3D5S1K1   A0A147BMN4   A0A147BIC7   R7VLH1   + More
D7ELX0   D6WYM1   A0A2H9T4N9   D7GYL9   A0A2H9T441   A0A2B4S280   A0A0P4VVV8   A0A147BJ61   A0A0P4VPK5   A0A1X7T6S7   A0A1E1XH11   W4XNU8   A0A131Y4V6   A0A2B4SC00   D6WYM2   A0A354GGU8   A0A147BM11   E3NN97   W4YYU9   A0A0A9Z9S6   A0A147BMC6   E3LJB3   A0A2P4VQ89   A0A147BQ97   A0A147BJ69   A0A147BJJ5   L7MD77   A0A0P4VXB7   A0A2G8L3E5   W4XMI9   L7LSG9   L7LSU8   A0A210QEX7   V4AQN4   E3MBS8   W4XIC7   A0A147BBB4   A0A147AJ39  

Pubmed

30148503    23254933    18362917    19820115    29150518    28503490    + More
25401762    26114425    26394399    25576852    29023486    28812685   

EMBL

AY359886    AAQ57129.1    ODYU01003026    SOQ41278.1    DPOC01000269    HCX22453.1    + More
GEGO01003370    JAR92034.1    GEGO01004865    JAR90539.1    AMQN01004026    AMQN01004027    KB292432    ELU17620.1    DS497938    EFA12433.1    KQ971357    EFA08424.1    NSIT01000234    PJE78200.1    GG695857    EFA13460.1    NSIT01000300    PJE77993.1    LSMT01000166    PFX24804.1    GDRN01111277    JAI56804.1    GEGO01004596    JAR90808.1    GDRN01111278    JAI56803.1    GFAC01000857    JAT98331.1    AAGJ04027320    GEFM01002248    JAP73548.1    LSMT01000104    PFX27391.1    EFA08423.1    DNUT01000248    HBI40236.1    GEGO01003567    JAR91837.1    DS269182    EFP10381.1    AAGJ04114595    GBHO01002973    JAG40631.1    GEGO01003481    JAR91923.1    DS268409    EFO94840.1    LFJK02000209    POM39446.1    GEGO01002473    JAR92931.1    GEGO01004630    JAR90774.1    GEGO01004441    JAR90963.1    GACK01003890    JAA61144.1    GDRN01110859    JAI56853.1    MRZV01000236    PIK54725.1    AAGJ04112043    GACK01010289    JAA54745.1    GACK01009888    JAA55146.1    NEDP02004020    OWF47171.1    KB201037    ESO99552.1    DS268433    EFO97776.1    AAGJ04072358    GEGO01007351    JAR88053.1    GCES01007896    JAR78427.1   

Proteomes

UP000014760    UP000007266    UP000225706    UP000007879    UP000007110    UP000008281    + More
UP000237256    UP000230750    UP000242188    UP000030746   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF17921   Integrase_H2C2
PF09004   DUF1891

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR011011   Znf_FYVE_PHD       
IPR041588   Integrase_H2C2       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR015095   AlkB_hom8_N       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q6UV17   A0A2H1VKB9   A0A3D5S1K1   A0A147BMN4   A0A147BIC7   R7VLH1   + More
D7ELX0   D6WYM1   A0A2H9T4N9   D7GYL9   A0A2H9T441   A0A2B4S280   A0A0P4VVV8   A0A147BJ61   A0A0P4VPK5   A0A1X7T6S7   A0A1E1XH11   W4XNU8   A0A131Y4V6   A0A2B4SC00   D6WYM2   A0A354GGU8   A0A147BM11   E3NN97   W4YYU9   A0A0A9Z9S6   A0A147BMC6   E3LJB3   A0A2P4VQ89   A0A147BQ97   A0A147BJ69   A0A147BJJ5   L7MD77   A0A0P4VXB7   A0A2G8L3E5   W4XMI9   L7LSG9   L7LSU8   A0A210QEX7   V4AQN4   E3MBS8   W4XIC7   A0A147BBB4   A0A147AJ39  

KEGG

101740536    no KO assigned | (RefSeq) uncharacterized LOC101740536

GO

GO:0003964   GO:0004519   GO:0016021   GO:0046872   GO:0016706   GO:0008168  

Length:

392

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00957

outside

1  -  392

 

 

Pi

10.855065

Theta

15.075524

Tajima's D

-0.841501

CLR

0.311848

CSRT

0.166641667916604

Interpretation

Uncertain