SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00070
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.149 Mitochondrial   Reliability : 1.541
 

Sequence

CDS
ATGCAGATATGCGAAACGGGACGGAGGCCTTACATGAATGTCTATTACCGGACAAAGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGTCGACTATCGATGGCGCAGCGAGCTCCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGAGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACTGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAAGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA
Protein
MQICETGRRPYMNVYYRTKVIRGYRTVSFEAACVLAGTPPWELEAESLAVDYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Summary

Cofactor
FAD
Similarity
Belongs to the GMC oxidoreductase family.
EMBL
AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    KZ149896    PZC78733.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    LBMM01006538    KMQ90523.1    AB078929    BAC06452.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01012027    KMQ86470.1    LBMM01016102    KMQ84557.1    LBMM01009494    KMQ88097.1    QOIP01000009    RLU18544.1    LBMM01003679    KMQ93242.1    ODYU01009945    SOQ54696.1    LBMM01008861    KMQ88580.1    D85594    BAA19776.1    LBMM01014132    KMQ85305.1    ODYU01005282    SOQ45985.1    GL450953    EFN80213.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    LBMM01024024    KMQ82631.1    LBMM01008682    KMQ88705.1    LBMM01006954    KMQ90166.1    QOIP01000031    RLU14697.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01005634    KMQ91349.1    ABLF02006132    QOIP01000007    RLU20280.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01007036    KMQ90099.1    QOIP01000002    RLU25407.1    LBMM01006662    KMQ90413.1    LBMM01011877    KMQ86578.1    GGMR01011974    MBY24593.1    LBMM01006110    KMQ90925.1    LBMM01006725    KMQ90373.1    QOIP01000003    RLU25053.1    LBMM01020326    KMQ83308.1    LBMM01014294    KMQ85237.1    LBMM01014909    KMQ85000.1    LBMM01004697    KMQ92167.1    LBMM01008349    KMQ88951.1    LBMM01006640    KMQ90440.1    LBMM01007659    KMQ89538.1    LBMM01015018    KMQ84954.1    LBMM01005216    KMQ91703.1    LBMM01002052    KMQ95336.1    LBMM01004152    KMQ92762.1    CH963857    KRF98317.1    LBMM01004505    KMQ92346.1    LBMM01020849    KMQ83202.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF00732   GMC_oxred_N
PF17919   RT_RNaseH_2
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
SUPFAM
SSF56219   SSF56219        + More
SSF51905   SSF51905       
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
246
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.09925
Exp number, first 60 AAs:
1.08606
Total prob of N-in:
0.16737
outside
1  -  246
 
 

Population Genetic Test Statistics

Pi
5.558811
Theta
14.286418
Tajima's D
-1.107372
CLR
0.004019
CSRT
0.115244237788111
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号