Gene

KWMTBOMO00070

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(-):2112659-2115106      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.149 Mitochondrial   Reliability : 1.541

CDS

ATGCAGATATGCGAAACGGGACGGAGGCCTTACATGAATGTCTATTACCGGACAAAGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGTCGACTATCGATGGCGCAGCGAGCTCCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGAGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACTGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAAGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MQICETGRRPYMNVYYRTKVIRGYRTVSFEAACVLAGTPPWELEAESLAVDYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A2W1B333   A0A2W1BSQ5   A0A2W1BDU5   + More
A0A2W1C3J5   Q8MY27   Q8MY33   Q8MY31   A0A0J7KJB9   Q8MY35   A0A0J7MZM4   A0A0J7N1D9   A0A0J7K2M2   A0A0J7KCQ3   A0A3L8DDS1   A0A0J7KS67   A0A2H1WNZ5   A0A0J7N7H9   O01419   A0A0J7MY07   A0A2H1VYR8   E2BVR6   A0A194R5D3   A0A3L8DDV9   A0A0J7JXN3   A0A0J7N7S8   A0A0J7KIY5   A0A3L8D2G3   A0A0J7KQK3   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KM81   J9KZ24   A0A3L8DIL1   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KIM6   A0A3L8DY91   A0A0J7KJ07   A0A0J7K840   A0A2S2P557   A0A0J7NEG9   A0A0J7KIW1   A0A3L8DXT9   A0A0J7JYN4   A0A0J7K4I2   A0A0J7MX22   A0A0J7KP92   A0A0J7KFG9   A0A0J7NCZ4   A0A0J7KGJ6   A0A0J7K3R6   A0A0J7KMU1   A0A0J7KYD2   A0A0J7KQU9   A0A0Q9WRU0   A0A0J7KPZ3   A0A0J7JYP2  

Pubmed

12644555    28756777    30249741    9092665    20798317    26354079    + More
17994087   

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    KZ149896    PZC78733.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    LBMM01006538    KMQ90523.1    AB078929    BAC06452.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01012027    KMQ86470.1    LBMM01016102    KMQ84557.1    LBMM01009494    KMQ88097.1    QOIP01000009    RLU18544.1    LBMM01003679    KMQ93242.1    ODYU01009945    SOQ54696.1    LBMM01008861    KMQ88580.1    D85594    BAA19776.1    LBMM01014132    KMQ85305.1    ODYU01005282    SOQ45985.1    GL450953    EFN80213.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    LBMM01024024    KMQ82631.1    LBMM01008682    KMQ88705.1    LBMM01006954    KMQ90166.1    QOIP01000031    RLU14697.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01005634    KMQ91349.1    ABLF02006132    QOIP01000007    RLU20280.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01007036    KMQ90099.1    QOIP01000002    RLU25407.1    LBMM01006662    KMQ90413.1    LBMM01011877    KMQ86578.1    GGMR01011974    MBY24593.1    LBMM01006110    KMQ90925.1    LBMM01006725    KMQ90373.1    QOIP01000003    RLU25053.1    LBMM01020326    KMQ83308.1    LBMM01014294    KMQ85237.1    LBMM01014909    KMQ85000.1    LBMM01004697    KMQ92167.1    LBMM01008349    KMQ88951.1    LBMM01006640    KMQ90440.1    LBMM01007659    KMQ89538.1    LBMM01015018    KMQ84954.1    LBMM01005216    KMQ91703.1    LBMM01002052    KMQ95336.1    LBMM01004152    KMQ92762.1    CH963857    KRF98317.1    LBMM01004505    KMQ92346.1    LBMM01020849    KMQ83202.1   

Proteomes

UP000036403    UP000279307    UP000008237    UP000053240    UP000007819    UP000007798    + More

PRIDE

Q868Q4    Q5KTM7    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF00732   GMC_oxred_N
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF51905   SSF51905       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.50.50.60    

ProteinModelPortal

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A2W1B333   A0A2W1BSQ5   A0A2W1BDU5   + More
A0A2W1C3J5   Q8MY27   Q8MY33   Q8MY31   A0A0J7KJB9   Q8MY35   A0A0J7MZM4   A0A0J7N1D9   A0A0J7K2M2   A0A0J7KCQ3   A0A3L8DDS1   A0A0J7KS67   A0A2H1WNZ5   A0A0J7N7H9   O01419   A0A0J7MY07   A0A2H1VYR8   E2BVR6   A0A194R5D3   A0A3L8DDV9   A0A0J7JXN3   A0A0J7N7S8   A0A0J7KIY5   A0A3L8D2G3   A0A0J7KQK3   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KM81   J9KZ24   A0A3L8DIL1   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KIM6   A0A3L8DY91   A0A0J7KJ07   A0A0J7K840   A0A2S2P557   A0A0J7NEG9   A0A0J7KIW1   A0A3L8DXT9   A0A0J7JYN4   A0A0J7K4I2   A0A0J7MX22   A0A0J7KP92   A0A0J7KFG9   A0A0J7NCZ4   A0A0J7KGJ6   A0A0J7K3R6   A0A0J7KMU1   A0A0J7KYD2   A0A0J7KQU9   A0A0Q9WRU0   A0A0J7KPZ3   A0A0J7JYP2  

KEGG

100141455    no KO assigned | (RefSeq) Hig, Bmhig; hikaru genki

GO

GO:0003964   GO:0016746   GO:0016021   GO:0050660   GO:0016614   GO:0008270   GO:0003676  

Length:

246

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.09925

Exp number, first 60 AAs:

1.08606

Total prob of N-in:

0.16737

outside

1  -  246

 

 

Pi

5.558811

Theta

14.286418

Tajima's D

-1.107372

CLR

0.004019

CSRT

0.115244237788111

Interpretation

Uncertain