SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00063
Pre Gene Modal
BGIBMGA002028
Annotation
PREDICTED:_protein_jim_lovell-like_isoform_X2_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.037
 

Sequence

CDS
ATGCGCAAACAGTGTTCCGAGCCGGCCGTCTCGACACCGCCGCTGCCCGTGTTGCAGAAGCACGAATCTTACCCGCAATACGCTACCAAGAACCGAAGATCGAAGCCGCAGGAACGCGAAGTCGGTTCGTTGTTGATTCGCGCCGTGACCGTGATCGACCGTCAGTCGTCGGGCGGCCCGTCGGCGGCGGCGGCCTCGTCGGAGTCCGGGGGGGAGGGCGTGACTACGCAGCGCGCCCGCCACACGCCCGCCGTCCGCTCCGGGCCGCCGCTCAGCTGCAACTTCTGCTGGAACACGGTGGACGAGTGCGGCCGGATCCTGCGCCGGAAGACGCAGTACCACTGCCCGGAGTGCCGCACCAACCTCTGCATAGTGCCCTGCTTCCACGAGTACCACGACAGCCCCGACGCGGAGCCGGGTGCCGGCGCCAGGTGA
Protein
MRKQCSEPAVSTPPLPVLQKHESYPQYATKNRRSKPQEREVGSLLIRAVTVIDRQSSGGPSAAAASSESGGEGVTTQRARHTPAVRSGPPLSCNFCWNTVDECGRILRRKTQYHCPECRTNLCIVPCFHEYHDSPDAEPGAGAR

Summary

Pfam
PF00651   BTB        + More
PF05225   HTH_psq
Interpro
IPR000210   BTB/POZ_dom        + More
IPR011333   SKP1/BTB/POZ_sf       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689        + More
SSF54695   SSF54695       

Ontologies

Topology

Subcellular location
Nucleus  
Length:
144
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.32451
outside
1  -  144
 
 

Population Genetic Test Statistics

Pi
6.489593
Theta
14.933403
Tajima's D
-2.322505
CLR
0
CSRT
0.00214989250537473
Interpretation
Uncertain
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