SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00042
Pre Gene Modal
BGIBMGA002088
Annotation
PREDICTED:_mitochondrial_thiamine_pyrophosphate_carrier-like_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 1.475 PlasmaMembrane   Reliability : 1.788
 

Sequence

CDS
ATGTGTGGAGTATTAGCTGGTGGCTCCACGGCCTTATTGGTCAGTCCCTTGGAGGTGATAAGAGTGAGGCAGATGCTAAACAAATCCCAATACAAAGGTATCATTAATGGCGCCCGTGAAGTGTACAAAACCAGAGGGATACTTTCATTTTATGAGGGCGTCAATGCTTCCTTACTACAGATGGGCCCCTCAGTTGGCATAGGCTTTGCTGTCTTCAATTTCGTCCAGCCCTTGGTCCTGGCCAGGATGCACAACTGCGATAGGGGGCACTGCAAGTCTGGACGTCACCACTACAACCCTGAACATGTGCTGCTGGCCAGCACTATAGCCGGATCAGCATCAGGCTTTGTATCAAAAAGCGTGACGTATCCATTTGATCTGGCCAAGAGAAGGATGCAGATTTCAGTTCGTATTTTCTTCTTTAATTTTGTCTTAAATGAGTACTGA
Protein
MCGVLAGGSTALLVSPLEVIRVRQMLNKSQYKGIINGAREVYKTRGILSFYEGVNASLLQMGPSVGIGFAVFNFVQPLVLARMHNCDRGHCKSGRHHYNPEHVLLASTIAGSASGFVSKSVTYPFDLAKRRMQISVRIFFFNFVLNEY

Summary

Similarity
Belongs to the mitochondrial carrier (TC 2.A.29) family.
EMBL
BABH01015689    BABH01015690    KZ149922    PZC77692.1    NWSH01000779    PCG74289.1    + More
AGBW02013268    OWR43794.1    KQ461108    KPJ09047.1    ODYU01007900    SOQ51081.1    GECU01023641    GECU01014345    GECU01005199    JAS84065.1    JAS93361.1    JAT02508.1    REGN01007114    RNA07235.1    CM000762    EES00336.1    NNAY01000159    OXU30435.1    AAZX01012280    GEBQ01026236    JAT13741.1    NWSH01002489    PCG68181.1    PCG68182.1    GEBQ01009070    JAT30907.1    ODYU01005213    SOQ45849.1    AP002483    AP003311    BAD61073.1    BAD61482.1    GAKP01009598    JAC49354.1    CM000126    EEC69923.1    HQ013291    AP008207    AK072025    AK107219    AP014957    CM000138    AEK99331.1    BAF03909.1    BAG92790.1    BAG97999.1    BAS70336.1    EEE53849.1    GDHF01020073    GDHF01012449    GDHF01004788    JAI32241.1    JAI39865.1    JAI47526.1    PQIB02000010    RLM92161.1    GAMC01005933    GAMC01005932    JAC00623.1    GBXI01005317    GBXI01005188    JAD08975.1    JAD09104.1    EU974400    BT065937    CM007649    ACG46518.1    ACN31813.1    ONM30094.1    KI632289    EYU19953.1    CM008050    PAN32187.1    CM009753    PUZ57988.1    GBYX01104212    JAO97807.1    AGNK02002854    CM003532    RCV24602.1    GEDC01002067    JAS35231.1    PQIB02000004    RLN23032.1    GEDC01022915    JAS14383.1    KB608654    EMP23805.1    GEDC01014967    JAS22331.1    CH933806    EDW15694.1    KRG01683.1    MCGN01000010    ORY92050.1    APGK01050932    KB741178    KB632325    ENN73182.1    ERL92378.1    UYSU01033142    VDL91552.1    LNRQ01000007    KZM87755.1    HADX01002662    SBP24894.1    KV923816    PIO40603.1    GEDC01013061    GEDC01002177    GEDC01001789    JAS24237.1    JAS35121.1    JAS35509.1    GBRH01073711    JAF24186.1    GCES01074376    JAR11947.1    GEZM01053537    GEZM01053536    JAV74021.1    GCES01019278    JAR67045.1    CH991552    EDQ88927.1    AEMK02000096    AERX01029876    ONM30093.1    CM000835    KRH73096.1    FO082268    CCO18755.1    GABZ01002331    JAA51194.1    CM001750    KJB74085.1    AUSU01007028    EPS61182.1    AC135208    AC139168    AAP06887.1    AAP06894.1    GACC01000339    JAA74245.1    CM000140    EEE58762.1    CM000128    EEC74933.1    AAGW02036927    AAGW02036928    AAGW02036929    AAGW02036930    AAGW02036931    AAGW02036932    AAGW02036933    AAKN02021208    NKXS01008023    PIM98853.1    GBHO01042381    GBRD01013115    JAG01223.1    JAG52711.1    GEVK01000302    JAU52530.1    KZ305026    PIA54565.1    GDHC01019696    GDHC01007424    JAP98932.1    JAQ11205.1    DP000009    AP008209    AK105349    AP014959    ABF95161.1    BAF11581.1    BAG97204.1    BAS83431.1    BDDD01005853    GAV89961.1    CM007904    OTF96616.1    LUHQ01000002    OAP09128.1    AK176255    BAD44018.1    AY128317    BT000042    CP002685    AK175138    AK175263    AAM91520.1    AAN15361.1    AEC09462.1    BAD42901.1   
Pfam
PF00153   Mito_carr
Interpro
IPR018108   Mitochondrial_sb/sol_carrier        + More
IPR023395   Mt_carrier_dom_sf       
IPR002067   Mit_carrier       
IPR002167   Graves_DC       
SUPFAM
SSF103506   SSF103506       
Gene 3D
PDB
2C3E     E-value=2.70324e-06,     Score=116

Ontologies

Topology

Length:
148
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
22.78154
Exp number, first 60 AAs:
4.50449
Total prob of N-in:
0.12917
outside
1  -  148
 
 

Population Genetic Test Statistics

Pi
29.96865
Theta
27.988149
Tajima's D
0.164925
CLR
0.012041
CSRT
0.424928753562322
Interpretation
Uncertain
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