Gene

KWMTBOMO00038

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr1(-):1245277-1247525      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.692

CDS

ATGGGGCTCACCCGGGTTGCGACTTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGATGACGCGGCAGTCCGCCTTATCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTTCGGGGCTATGCGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGTTCCGAATGACTCTGCACCCTCAGAGGCCGCATTCTACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGTTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATACATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAAGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCGCAGGGAAGCGTCCTGGCCCCACTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAGTAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTTTGAGGATGCAGAGGCTTTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCTTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCACCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLIDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFVPNDSAPSEAAFYQSVEESVANLLSSPVPPLGDDVFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVTAGVPQGSVLAPLLYALYTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARCARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRARLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A2A4JQF8   J9LF86   J9KCZ4   X1WN18   A0A1Y1KUU7   X1XGU0   + More
X1WZH0   X1WNI2   J9LFC9   J9KPF1   J9LC21   J9L876   A0A2S2RAN7   X1WQR0   J9KEU4   J9JS95   A0A1Y1NA23   J9JUG3   V5GNJ2   A0A087UCW3   J9KKL3   J9LF85   A0A2J7QFL0   A0A2J7R2E1   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7RKP3   X1WLB2   A0A2J7PBY3   A0A2S2PR14   A0A2J7QY69   A0A2J7PU96   A0A2A4K918   A0A2J7QR37   A0A2J7R8R8   A0A0N1PFV1   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7PDM0   A0A2J7RS77   A0A2J7PMP6   A0A2J7Q059   A0A139WA11   A0A2J7RB54   A0A139W8G9   A0A0A9YJ00   A0A2J7Q4F7   A0A2J7Q6J2   A0A2J7R4B7   A0A2J7RM10   A0A2J7RIW7   A0A2J7PMP9   A0A2J7RPU2   A0A2J7QUJ9   A0A0A9YU04   V5GNF3   A0A1Y1LKN6   X1WWC4   A0A224X6Q4   A0A069DW01   A0A2S2N9P4   Q8T456   A0A2J7PQB5   A0A224XF24   A0A2A4K8E7   A0A224XB44   A0A2H8U0H5   A0A2J7R098   A0A2J7RE85   A0A2S2NGV8   A0A2S2PX53   A0A182GA28   A0A2J7R7D0   A0A2J7RS81   A0A023F069   A0A224XIB0   A0A069DZC5   A0A2S2QJM7   A0A2J7Q1Y9   A0A2J7Q9Z1   A0A2J7R4U3   A0A2J7PDS9   A0A2J7QES2   A0A023EYS8   A0A2J7PSM7   A0A3N5Z7I3   A0A2J7QB68   P21328   A0A2S2Q383   A0A2J7PMN4   O96546   A0A2H8TF37   A0A2J7PVX3   A0A2J7Q2R1   A0A2J7Q627  

EC Number

2.7.7.49

Pubmed

28004739    26354079    18362917    19820115    25401762    26334808    + More
26483478    25474469    30086797    2463954    3040362    1714378    10380107   

EMBL

NWSH01000895    PCG73652.1    ABLF02017815    ABLF02008463    ABLF02021177    ABLF02027367    + More
ABLF02066338    GEZM01074951    JAV64378.1    ABLF02055645    ABLF02034467    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02023911    ABLF02041767    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02033522    GGMS01017914    MBY87117.1    ABLF02050434    ABLF02064867    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02028535    ABLF02028545    GEZM01008457    JAV94772.1    ABLF02008677    ABLF02011967    ABLF02052409    ABLF02056408    GALX01005299    JAB63167.1    KK119261    KFM75202.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02017813    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    NEVH01002716    PNF41415.1    ABLF02042518    ABLF02057746    NEVH01027074    PNF13841.1    GGMR01019198    MBY31817.1    NEVH01009134    PNF33528.1    NEVH01021205    PNF19912.1    NWSH01000032    PCG80496.1    NEVH01011985    PNF31054.1    NEVH01006721    PNF37225.1    KQ459265    KPJ02064.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    NEVH01026386    PNF14434.1    NEVH01000280    PNF43672.1    NEVH01023962    PNF17612.1    NEVH01020071    PNF21969.1    KQ971729    KYB24751.1    NEVH01005938    PNF38077.1    KQ973342    KXZ75569.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01018383    PNF23463.1    NEVH01017470    PNF24199.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01003017    PNF40781.1    NEVH01023961    PNF17613.1    NEVH01001355    PNF42855.1    NEVH01010546    PNF32261.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GALX01005359    JAB63107.1    GEZM01053022    JAV74219.1    ABLF02003961    ABLF02059872    GFTR01008279    JAW08147.1    GBGD01000799    JAC88090.1    GGMR01000857    MBY13476.1    AY089343    AAL90081.2    NEVH01022639    PNF18527.1    GFTR01008038    JAW08388.1    PCG80497.1    GFTR01008262    JAW08164.1    GFXV01007093    MBW18898.1    NEVH01008277    PNF34262.1    NEVH01005277    PNF39135.1    GGMR01003407    MBY16026.1    GGMS01000737    MBY69940.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01006736    PNF36716.1    NEVH01000269    PNF43694.1    GBBI01003810    JAC14902.1    GFTR01008246    JAW08180.1    GBGD01000880    JAC88009.1    GGMS01008766    MBY77969.1    NEVH01019376    PNF22596.1    NEVH01016340    PNF25410.1    NEVH01007402    PNF35856.1    NEVH01026154    PNF14491.1    PNF27092.1    GBBI01004395    JAC14317.1    NEVH01021925    PNF19341.1    RPOV01000134    RPJ78669.1    NEVH01016302    PNF25823.1    M22874    M38643    GGMS01002992    MBY72195.1    NEVH01023979    PNF17579.1    AF081103    AAC72921.1    GFXV01000908    MBW12713.1    NEVH01020940    PNF20481.1    NEVH01019080    PNF22876.1    NEVH01017542    PNF24034.1   

Proteomes

UP000218220    UP000007819    UP000054359    UP000235965    UP000053268    UP000007266    + More
UP000069940    UP000249989   

PRIDE

Q8T456    P21328   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03184   DDE_1
PF07727   RVT_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR004875   DDE_SF_endonuclease_dom       
IPR013103   RVT_2       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4JQF8   J9LF86   J9KCZ4   X1WN18   A0A1Y1KUU7   X1XGU0   + More
X1WZH0   X1WNI2   J9LFC9   J9KPF1   J9LC21   J9L876   A0A2S2RAN7   X1WQR0   J9KEU4   J9JS95   A0A1Y1NA23   J9JUG3   V5GNJ2   A0A087UCW3   J9KKL3   J9LF85   A0A2J7QFL0   A0A2J7R2E1   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7RKP3   X1WLB2   A0A2J7PBY3   A0A2S2PR14   A0A2J7QY69   A0A2J7PU96   A0A2A4K918   A0A2J7QR37   A0A2J7R8R8   A0A0N1PFV1   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7PDM0   A0A2J7RS77   A0A2J7PMP6   A0A2J7Q059   A0A139WA11   A0A2J7RB54   A0A139W8G9   A0A0A9YJ00   A0A2J7Q4F7   A0A2J7Q6J2   A0A2J7R4B7   A0A2J7RM10   A0A2J7RIW7   A0A2J7PMP9   A0A2J7RPU2   A0A2J7QUJ9   A0A0A9YU04   V5GNF3   A0A1Y1LKN6   X1WWC4   A0A224X6Q4   A0A069DW01   A0A2S2N9P4   Q8T456   A0A2J7PQB5   A0A224XF24   A0A2A4K8E7   A0A224XB44   A0A2H8U0H5   A0A2J7R098   A0A2J7RE85   A0A2S2NGV8   A0A2S2PX53   A0A182GA28   A0A2J7R7D0   A0A2J7RS81   A0A023F069   A0A224XIB0   A0A069DZC5   A0A2S2QJM7   A0A2J7Q1Y9   A0A2J7Q9Z1   A0A2J7R4U3   A0A2J7PDS9   A0A2J7QES2   A0A023EYS8   A0A2J7PSM7   A0A3N5Z7I3   A0A2J7QB68   P21328   A0A2S2Q383   A0A2J7PMN4   O96546   A0A2H8TF37   A0A2J7PVX3   A0A2J7Q2R1   A0A2J7Q627  

PDB

6AR3     E-value=2.95341e-05,     Score=116

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0003676   GO:0008270   GO:0004519  

Length:

685

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01063

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00052

outside

1  -  685

 

 

Pi

5.188572

Theta

16.333077

Tajima's D

-0.549175

CLR

0

CSRT

0.229388530573471

Interpretation

Uncertain