Gene

KWMTBOMO00035

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr1(+):1076276-1078342      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.524

CDS

ATGCGTGTGTGCTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCCCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGAGGTGCCCTCCTCCCGGGCCTGAGCGTAATATGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGTGGCGCATGTCGTCGGCAAAATTAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGCTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATAGGTGGCGGGCTGAACTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCACGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCATTTTCCGGCTTACGCAGGTGCTCACTGGGCATGGTTGTTTCGGTGAGTTCCTGCACCGGATCACAGCCGAGCCGACGGCAGATTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGATGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGGGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MRVCFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYRWRAELRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLIFRLTQVLTGHGCFGEFLHRITAEPTADCHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCGCTISQKEAAGRVRDAQSRRRRAGAREADLAQALAL

Uniprot

Q868Q4   A0A2W1B333   Q8MY27   Q8MY33   Q8MY31   Q8MY35   + More
A0A2W1C3J5   O01419   A0A0J7N1D9   A0A0J7KM11   A0A194R5D3   A0A0J7KIY5   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KLT9   A0A0J7N7H9   A0A0J7KQK3   A0A0J7KL06   A0A0J7KIW1   A0A0J7KYD2   A0A0J7N7S8   A0A0J7MY07   A0A0J7KC11   A0A0J7KIM6   A0A0J7KPR0   A0A3L8D2G3   A0A0J7KLH8   A0A3L8DDV9   A0A0J7KWU5   A0A0J7K3R2   A0A0J7K3R6   A0A0J7NMN5   A0A0J7KF37   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7KRB8   A0A0J7JXX4   A0A0J7NAV8   A0A0J7KGJ6   A0A0J7MY17   A0A0J7KF40   A0A0J7KCZ9   A0A0J7KMG5   A0A0J7KP92   A0A0J7N0R3   A0A0J7KMU1   A0A2S2N8I2   A0A0J7NFZ0   A0A0J7KFH2   A0A0J7KW81   A0A1B6HLL2   X1WJY4   A0A2S2PEZ7   A0A0J7NDI6   J9KNG8   J9LJ80   A0A2S2PBP5   A0A2S2NJ82   A0A2S2PEU2   A0A3Q0JIB3   A0A2H8THF8   X1WSG8   A0A2S2PSC1   X1WXT5   J9KHF7   J9KJG8   D7GY87   J9LVU7   A0A2H8TIE5   A0A0A9Z5Y1   A0A0A1WPA4   J9KPP8   A0A0J7K6Z4   V5I8F3   A0A139W939   J9K6F0   J9LEU7   A0A2H8TIT6   J9KT70   A0A2S2NQQ6  

Pubmed

12644555    28756777    9092665    26354079    30249741    18362917    + More
19820115    25401762    25830018   

EMBL

AB090825    BAC57926.1    KZ150386    PZC71062.1    AB078935    BAC06462.1    + More
AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    D85594    BAA19776.1    LBMM01012027    KMQ86470.1    LBMM01005707    KMQ91279.1    KQ460685    KPJ12887.1    LBMM01006954    KMQ90166.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01008861    KMQ88580.1    LBMM01004272    KMQ92618.1    LBMM01006063    KMQ90967.1    LBMM01006725    KMQ90373.1    LBMM01002052    KMQ95336.1    LBMM01008682    KMQ88705.1    LBMM01014132    KMQ85305.1    LBMM01009738    KMQ87908.1    LBMM01007036    KMQ90099.1    LBMM01004634    KMQ92224.1    QOIP01000031    RLU14697.1    LBMM01005948    KMQ91066.1    QOIP01000010    RLU18098.1    LBMM01002480    KMQ94776.1    LBMM01014956    KMQ84982.1    LBMM01015018    KMQ84954.1    LBMM01003245    KMQ93755.1    LBMM01008448    KMQ88867.1    LBMM01015025    KMQ84953.1    LBMM01004505    KMQ92346.1    LBMM01003988    KMQ92922.1    LBMM01021647    KMQ83033.1    LBMM01007425    KMQ89740.1    LBMM01007659    KMQ89538.1    LBMM01014122    KMQ85315.1    LBMM01008422    KMQ88894.1    LBMM01009527    LBMM01009515    KMQ88059.1    KMQ88067.1    LBMM01005465    KMQ91492.1    LBMM01004697    KMQ92167.1    LBMM01012412    KMQ86235.1    LBMM01005216    KMQ91703.1    GGMR01000779    MBY13398.1    LBMM01005474    KMQ91485.1    LBMM01008278    KMQ89009.1    KMQ94772.1    GECU01032129    JAS75577.1    ABLF02011238    GGMR01015159    MBY27778.1    LBMM01006496    KMQ90570.1    ABLF02005203    ABLF02041316    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMR01014195    MBY26814.1    GGMR01004600    MBY17219.1    GGMR01015354    MBY27973.1    GFXV01001748    MBW13553.1    ABLF02004597    ABLF02041324    GGMR01019609    MBY32228.1    ABLF02004854    ABLF02041317    ABLF02014530    ABLF02018586    ABLF02058000    ABLF02041886    KQ971864    EFA13315.2    ABLF02034925    GFXV01002090    MBW13895.1    GBHO01002982    JAG40622.1    GBXI01013438    JAD00854.1    ABLF02009991    ABLF02009992    ABLF02054952    LBMM01012595    KMQ86127.1    GALX01004785    JAB63681.1    KQ972691    KXZ75807.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02026953    GFXV01002242    MBW14047.1    ABLF02010223    GGMR01006838    MBY19457.1   

Proteomes

UP000036403    UP000053240    UP000279307    UP000007819    UP000079169    UP000007266    + More

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q868Q4   A0A2W1B333   Q8MY27   Q8MY33   Q8MY31   Q8MY35   + More
A0A2W1C3J5   O01419   A0A0J7N1D9   A0A0J7KM11   A0A194R5D3   A0A0J7KIY5   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KLT9   A0A0J7N7H9   A0A0J7KQK3   A0A0J7KL06   A0A0J7KIW1   A0A0J7KYD2   A0A0J7N7S8   A0A0J7MY07   A0A0J7KC11   A0A0J7KIM6   A0A0J7KPR0   A0A3L8D2G3   A0A0J7KLH8   A0A3L8DDV9   A0A0J7KWU5   A0A0J7K3R2   A0A0J7K3R6   A0A0J7NMN5   A0A0J7KF37   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7KRB8   A0A0J7JXX4   A0A0J7NAV8   A0A0J7KGJ6   A0A0J7MY17   A0A0J7KF40   A0A0J7KCZ9   A0A0J7KMG5   A0A0J7KP92   A0A0J7N0R3   A0A0J7KMU1   A0A2S2N8I2   A0A0J7NFZ0   A0A0J7KFH2   A0A0J7KW81   A0A1B6HLL2   X1WJY4   A0A2S2PEZ7   A0A0J7NDI6   J9KNG8   J9LJ80   A0A2S2PBP5   A0A2S2NJ82   A0A2S2PEU2   A0A3Q0JIB3   A0A2H8THF8   X1WSG8   A0A2S2PSC1   X1WXT5   J9KHF7   J9KJG8   D7GY87   J9LVU7   A0A2H8TIE5   A0A0A9Z5Y1   A0A0A1WPA4   J9KPP8   A0A0J7K6Z4   V5I8F3   A0A139W939   J9K6F0   J9LEU7   A0A2H8TIT6   J9KT70   A0A2S2NQQ6  

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

425

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.18409

Exp number, first 60 AAs:

0.60938

Total prob of N-in:

0.04639

outside

1  -  425

 

 

Pi

2.848154

Theta

2.197883

Tajima's D

-1.395895

CLR

0

CSRT

0.0616469176541173

Interpretation

Uncertain