Gene

KWMTBOMO00028

Pre Gene Modal

BGIBMGA002082

Annotation

actin_[Operophtera_brumata]

Location

Bomo_Chr1(+):702706-713422      View in EpiBrowser

Full name

Actin-2       + More
Actin-7      

Alternative Name

Actin-2

Location in the cell

Cytoplasmic   Reliability : 2.56

CDS

ATGTCAGGCGACGCTATCGGCATTGTGTTGGATATTGGATCCAAATATACTAAGGCTGGTTTCGCAGGAGAATGTTTCCCAAGAGCAGTCTTTCCGAGCACCGTCGGGAGATTTCGTCAATCAGGTCTCGTTGACGGATTCCCAGAGGTCTACTGTGGAAATGAAGCTATTCAAAAAAGAGGAATTTCTCACCTCACTTGGCCGGTAAGCAAAGGGCTGATTCAAGATTGGGATGAGATGGAGAAGCTTTGGCATCACATTTTCTATAAAGGCCTACTTATACCTCCAGAAGCTTGCAGTGTCGTGCACTCGATCCATCCTTTATGCCCAAGGAAGCACCAAGAAAAAATAACAGAAATACTCTTCGAATCATTCACAATCAACTCTCTGTACTTGGCAAGAATGCAGGCTTTAGCTCTGTTTGCAAGCGGTCGGACTACGGGAGTTGTTTGGGAGAGCGGGTACTCATGCTCATACGCAGCCCCAGTCTTTGAAGGATTTCCATTAAGGAATGCCACGTTTATGTCACCGGTCGACGGAGAAACTTTATCTGGACATTTACAAAAATTACTGGCGACTGTAGGCTATTCTTTCACAACTAAAGCGGATAATGACATTTTGGATCAAATTAAGTCTGATAAATGCTACGTGGCGTTAGACTACGATGATGAAGTGGAATCGGGAAAGTGCTCTGGAGATGATAAACACGTTTACACGTTACCGGATGGACAGGAAATATTTTTAGGGCCAGAACGTTTTCAATGTCCAGAGTTGATGTTCCGGCCGAATCTGGGTGGGCTCCAATGTCCGAGTTTGGTGGATTTGTTATGCAAAAGTATCGAGAATTGTGATTTGGATTACCAGCGTGCTTTCTACGAGAATGTTGTGATTGCTGGTGGATCCACTATGTTTCCTGGAATTGTGGATCGGCTACAATTAGAACTGACGAAGAAGTTGTTGAAACGCTCGGAGAATTGGAAGGTTCTCGTCGACGCCATGACAACTAGGCAGTTTGCTGTATGGAACGGTGGATCCATTATGGCCTCTCTGAGTACTATGAACGGTTTTTTGTTGAGTAAAGAAGAATACGAAGATAACGGTTCTGACAGAGTCAAGCATCTATTTTTTTGA

Protein

MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLLSKEEYEDNGSDRVKHLFF

Description

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation.

Subunit

Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. The binding of profilin to monomeric G-actin cause the sequestration of actin into profilactin complexes, and prevents the polymerization.

Miscellaneous

There are at least eight actin genes in rice.
There are 8 actin genes in A.thaliana.

Similarity

Belongs to the actin family.

Keywords

ATP-binding   Complete proteome   Cytoplasm   Cytoskeleton   Nucleotide-binding   Reference proteome   Acetylation  

Feature

chain  Actin-2

Uniprot

H9IXU9   A0A0L7L7V8   A0A2A4JZW6   A0A2W1BVQ8   A0A2H1W2S8   A0A212EQF7   + More
M2W5E2   A0A0D9XLE8   A0A0D3HFI5   A0A0E0H4X6   A0A0E0EZS7   A0A0E0R185   A0A0E0BCK4   A0A0E0M9L0   A3C6D7   P0C539   A0A1R3K6S2   A0A1R3JK78   A0A2S3IKW4   A0A2T7C4P4   J3N402   A0A3L6TQH0   A0A3L6S6Y4   B6SI11   A0A059CIZ9   W5AH12   M8BZM2   F2CSU3   M8ASF1   A0A067YNJ5   I1I5C8   A0A0D2MXJ8   A0A2P5RXK1   A0A0B0P7F0   A0A1U8NDN5   M0TX26   A0A0D3CS69   A0A3P6G7D2   C0HHR4   A0A061G2I3   A0A075AJN4   A0A183LCR5   C5WW94   A0A1E5UXJ2   A0A0A7LUI4   G3KF67   A0A200PLG9   A0A2S3HMU2   A0A2U7N5E0   A0A2T7DBC6   A0A1E5VH52   A0A3L6PSP8   K3XQU0   D3JTC9   A0A200PMK0   A0A1U8JZ36   A0A385HDR9   A0A183K206   A0A2P5F5I2   A0A075A1W9   A0A2N9EGA0   A0A0A7LWK3   B4FRH8   A0A2H3Z634   A0A0A9D1Q4   A0A2S3HBM7   A0A2T7ED87   A0A3L6RE42   A0A2T9Z0G9   C5Y567   A0A0E3VJX4   V5YU14   M0TQW8   M0SBB4   A0A2P5AVT0   A0A2T9YPQ8   K7N8I1   K7N907   B4XAN5   E9P1J6   A0A1D6LI44   C5YYR1   D7M276   A0A178UEW4   P53492   H9B8D9   A0A2H3XM37   Q5J1K2   A0A1B3IJS2   A0A218WC81   Q5XPX5   C5YY31   B4F989   A0A0D3HIK8   B8BJ82   A0A0E0MCT4   J3N6A3   A0A0E0F2V9   A0A0D9XPE5   Q67G20  

Pubmed

19121390    26227816    28756777    22118469    23471408    22408737    + More
12791992    16100779    18089549    24280374    15685292    12869764    2102841    2103449    23481403    30683860    18937034    19965430    24919147    21415278    23075845    23535596    20148030    23257886    25893780    22801500    24916971    19936069    23731509    19189423    28552780    22580951    30157377    23917264    26217707    29764946    26163025    24929230    21478890    27354520    8754679    10048488    27862469    14593172    8852856    11449050    19245862    18507865    16188032    16381971    23299411   

EMBL

BABH01015634    BABH01015635    JTDY01002438    KOB71424.1    NWSH01000334    PCG77316.1    + More
KZ149922    PZC77714.1    ODYU01005843    SOQ47132.1    AGBW02013269    OWR43718.1    KB454495    EME31001.1    AC087192    DP000086    AP008216    AP014966    CM000147    AK070531    X15864    AWUE01014588    OMP02754.1    AWWV01007708    OMO95177.1    CM008054    PAN46522.1    CM009757    PUZ38318.1    PQIB02000001    RLN41725.1    PQIB02000005    RLN16698.1    EU952376    CM000781    ACG24494.1    AQK64663.1    KK198756    KCW78362.1    KD511611    EMT27233.1    AK354695    BAJ85914.1    KD062672    EMS63944.1    KC775782    AHE76167.1    CM000882    KQJ97425.1    CM001743    KJB24092.1    KZ647427    PPD91531.1    KN417221    KHG20985.1    LR031880    VDD60990.1    BT061870    CM007647    ACN26567.1    ONM05198.1    CM001881    EOY23776.1    KL596623    KER33689.1    UZAI01000358    VDO51757.1    CM000760    EER93954.1    LWDX02059504    OEL17580.1    KM510381    AIZ68150.1    JN204912    AEM89276.1    MVGT01004545    OUZ99073.1    CM008050    PAN26390.1    KX268094    ASF57549.1    CM009753    PUZ52873.1    LWDX02039652    OEL24463.1    PQIB02000016    PQIB02000004    RLM61306.1    RLN24513.1    AGNK02003468    CM003532    RCV29187.1    GU290545    GU290546    ADB80031.1    MVGT01004453    OUZ99434.1    MH450176    AXY40445.1    UZAK01033022    VDP33680.1    JXTC01000061    PON93040.1    KV894229    KER33688.1    OON18392.1    OIVN01000069    SPC73691.1    KM510380    AIZ68149.1    BT039716    EU966244    EU969279    CM000780    ACF84721.1    ACG38362.1    AQK58879.1    GBRH01216154    JAD81741.1    CM008048    PAN19295.1    CM009751    PUZ65790.1    PQIB02000009    PQIB02000003    RLN01079.1    RLN30125.1    MBFR01000003    PVU98105.1    CM000764    EES08028.1    LC040883    BAR40316.1    AB894322    BAO20877.1    JXTB01000434    PON40670.1    MBFS01002648    PVU94338.1    GU181353    ADQ27230.1    GU181354    ADQ27231.1    EU009452    ABV59397.1    HQ853237    ADW83713.1    CM000782    AQK79525.1    CM000768    EES19603.1    GL348718    EFH47645.1    LUHQ01000005    OAO92348.1    U37281    U27811    AB016893    CP002688    AY062702    AY063980    AY096397    AY114679    AY120779    JN983213    AFC88818.1    AY550991    EU284857    AAT45848.1    ACF06478.1    KU720631    AOF40434.1    MTKT01004810    PGOL01000328    OWM70058.1    PKI72382.1    AY742219    AAU93346.1    EES18852.1    KXG21029.1    BT033677    BT039238    EU961034    EU969521    BT054543    BT064389    BT066790    CM000784    ACF78682.1    ACG33152.1    AQK79519.1    AQK79526.1    AQK95624.1    AQK95628.1    CM000136    EEC67736.1    AY212324    AC120533    DP000010    AP008217    AK060893    AP014967    CM000148    AAO62546.1    AAX95098.1    ABA91666.1    BAF27675.1    BAG87600.1    BAT12814.1    EEE51698.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000007151    UP000030680    UP000032180    + More
UP000026960    UP000006591    UP000008021    UP000008022    UP000026961    UP000026962    UP000059680    UP000187203    UP000188268    UP000243499    UP000244336    UP000006038    UP000275267    UP000007305    UP000030711    UP000019116    UP000011116    UP000015106    UP000008810    UP000032304    UP000239050    UP000189702    UP000012960    UP000032141    UP000026915    UP000050790    UP000277204    UP000000768    UP000195402    UP000004995    UP000050789    UP000237000    UP000228380    UP000245383    UP000237105    UP000245609    UP000008694    UP000078284    UP000006548    UP000233551    UP000007015   

PRIDE

H9IXU9    A3C6D7    P0C539    F2CSU3    C5WW94    D7M276    + More
P53492    B8BJ82   

Pfam

PF00022   Actin

Interpro

IPR004000   Actin        + More
IPR020902   Actin/actin-like_CS       
IPR004001   Actin_CS       

ProteinModelPortal

H9IXU9   A0A0L7L7V8   A0A2A4JZW6   A0A2W1BVQ8   A0A2H1W2S8   A0A212EQF7   + More
M2W5E2   A0A0D9XLE8   A0A0D3HFI5   A0A0E0H4X6   A0A0E0EZS7   A0A0E0R185   A0A0E0BCK4   A0A0E0M9L0   A3C6D7   P0C539   A0A1R3K6S2   A0A1R3JK78   A0A2S3IKW4   A0A2T7C4P4   J3N402   A0A3L6TQH0   A0A3L6S6Y4   B6SI11   A0A059CIZ9   W5AH12   M8BZM2   F2CSU3   M8ASF1   A0A067YNJ5   I1I5C8   A0A0D2MXJ8   A0A2P5RXK1   A0A0B0P7F0   A0A1U8NDN5   M0TX26   A0A0D3CS69   A0A3P6G7D2   C0HHR4   A0A061G2I3   A0A075AJN4   A0A183LCR5   C5WW94   A0A1E5UXJ2   A0A0A7LUI4   G3KF67   A0A200PLG9   A0A2S3HMU2   A0A2U7N5E0   A0A2T7DBC6   A0A1E5VH52   A0A3L6PSP8   K3XQU0   D3JTC9   A0A200PMK0   A0A1U8JZ36   A0A385HDR9   A0A183K206   A0A2P5F5I2   A0A075A1W9   A0A2N9EGA0   A0A0A7LWK3   B4FRH8   A0A2H3Z634   A0A0A9D1Q4   A0A2S3HBM7   A0A2T7ED87   A0A3L6RE42   A0A2T9Z0G9   C5Y567   A0A0E3VJX4   V5YU14   M0TQW8   M0SBB4   A0A2P5AVT0   A0A2T9YPQ8   K7N8I1   K7N907   B4XAN5   E9P1J6   A0A1D6LI44   C5YYR1   D7M276   A0A178UEW4   P53492   H9B8D9   A0A2H3XM37   Q5J1K2   A0A1B3IJS2   A0A218WC81   Q5XPX5   C5YY31   B4F989   A0A0D3HIK8   B8BJ82   A0A0E0MCT4   J3N6A3   A0A0E0F2V9   A0A0D9XPE5   Q67G20  

PDB

4EFH     E-value=3.89152e-89,     Score=836

KEGG

101743052    no KO assigned | (RefSeq) actin-52-like

GO

GO:0005524   GO:0005856   GO:0005737   GO:0048767   GO:0009570   GO:0009506   GO:0009941   GO:0005886   GO:0009845   GO:0051301   GO:0009611   GO:0009416   GO:0005730   GO:0009733   GO:0005618   GO:0005829   GO:0005739   GO:0005200   GO:0010053   GO:0048364  

PANTHER

PTHR11937  

Subcellular location

  

Length:

376

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.5686

Exp number, first 60 AAs:

0.00114

Total prob of N-in:

0.00723

outside

1  -  376

 

 

Pi

19.020718

Theta

23.048772

Tajima's D

-0.907205

CLR

0.087464

CSRT

0.158842057897105

Interpretation

Uncertain