SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00025
Pre Gene Modal
BGIBMGA002052
Annotation
PREDICTED:_cytochrome_b-c1_complex_subunit_1?_mitochondrial-like_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 1.303
 

Sequence

CDS
ATGCTGAAGGCTTCTATTAGATTCACACAAATTTGGCGCCCAGTCGTCACTCCTGTACGGAATCGTCCATATCCGATTCCTTTTATAGATTTCCTTAAGAATATTCCTGATACTCAGTATTCTAGGCTGGATAATGGTTTGACAATTGCCACTGAAGAAAGGGAAAGTTACAATACTTGCGTTGGACTGTTTATAGACGCTGGTTCTAGGTATGAGGACAACTTTGAAAATGGGGTGGGCCACTTTTTCGAACATCTAGCGTTTAAAGGTACAAAATGTCGAACAAAAACTTTACTCGAAGATCAGATTTCATCTTCTGGCGCCATCTTCAAATGCTTCACTACTAGAGAAATGGTGGCGTATTACGCAGATTGTCTTTCTTACGACCTTCCGCGTGTTGTGGAAATTTTAACGGACTGCATATATAATAACAACTTTGCGACGGCTGACATCGAACTTCAGAGAAAGATTGTTTACGCGGAAATGATCGAACAAGACAAAAATTCGAACACTGTACTTTACGATTACTTGCATTCCACAGCATTTCAGGGTACGCCGCTCGCGCAAACCGTAATGGGACCGAGCTGTAATTTGTATAACTTCACTGACATGACGATCTCTAGGTACCTAGCGAAACGATTCGATCCAGCGCGGACCGTTCTCGTTGCTGTTGGAGGAGTCAAACATGATCAAATGGTCTTTCTGGCAAACAATTACTTGAATAAGCTAACGCCCCTAAAATGTGTCGATATAGGTGTTGCTCGATATACGGGTTCTGAGATTAGGTTTAGAAATGATTCCTTACCAGTCGCCAACTGTGTAATGGTAATAGAAGGACCATCTTTTTGCCATAAAGACCAAATTGTAATGGAAGTGGCAGCAAGCATCATTAGTGGGTGGGACAAGTCCCAGCCTGGAGGTATTAACCATGCAGTTAGAATAGCACGAGAGGCCTCTACGGATAAATTCTGCGACTCATATAAAGCAGTTAACATTACTTATAAGGATACGAGCCTTTGGGGGGTGCAATTCATGGGGCCGAGTGTGGAGCTCGAAGACATGGTACTATCAATTCAAGGAGAGTGGATGAATATGTGCCATACGATAACTGATGCAGAAGTAGAGAGAGCTAAACGGGAATTGAAAACTAAAGTGTTGTCGAAGACTGAAAGTTGCGCTGGTACATGTCACGAAATAGGCAGATGGGTTCTGTACAACGGAAGAAGACCACCGCTACACGAGAGAATCTGTGCTATCGACAGCGTCTTCGCACAAGACATTCGACGAGTGTGTAATAAGTATATTTATGACAAGTGCCCGGCAGTAGCGGCAGTAGGTCCCACGGAAGGTCTCCCGGACTATACCAAGATAAGAGCTGGAATGTATTGGTTGAGAATATAA
Protein
MLKASIRFTQIWRPVVTPVRNRPYPIPFIDFLKNIPDTQYSRLDNGLTIATEERESYNTCVGLFIDAGSRYEDNFENGVGHFFEHLAFKGTKCRTKTLLEDQISSSGAIFKCFTTREMVAYYADCLSYDLPRVVEILTDCIYNNNFATADIELQRKIVYAEMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVMGPSCNLYNFTDMTISRYLAKRFDPARTVLVAVGGVKHDQMVFLANNYLNKLTPLKCVDIGVARYTGSEIRFRNDSLPVANCVMVIEGPSFCHKDQIVMEVAASIISGWDKSQPGGINHAVRIAREASTDKFCDSYKAVNITYKDTSLWGVQFMGPSVELEDMVLSIQGEWMNMCHTITDAEVERAKRELKTKVLSKTESCAGTCHEIGRWVLYNGRRPPLHERICAIDSVFAQDIRRVCNKYIYDKCPAVAAVGPTEGLPDYTKIRAGMYWLRI

Summary

Similarity
Belongs to the peptidase M16 family.
EMBL
BABH01015630    NWSH01000334    PCG77313.1    ODYU01006579    SOQ48544.1    JTDY01005490    + More
KOB66946.1    KQ460953    KPJ10354.1    KQ459599    KPI94358.1    AK401645    BAM18267.1    KQ461103    KPJ09417.1    ODYU01002058    SOQ39097.1    NWSH01000617    PCG75271.1    JTDY01000495    KOB76918.1    GANO01002793    JAB57078.1    GGFJ01004938    MBW54079.1    GECZ01006439    JAS63330.1    GAMD01003405    JAA98185.1    GGFM01001339    MBW22090.1    CH940652    EDW59372.1    GGFK01003137    MBW36458.1    GGFK01003623    MBW36944.1    CH933806    EDW14458.1    OUUW01000013    SPP88030.1    GFDG01001711    JAV17088.1    AXCM01001160    GDAI01000451    JAI17152.1    ADMH02001041    ETN64350.1    CH954181    EDV48936.1    CM000160    EDW97530.1    CH964272    EDW83848.1    CH916369    EDV93316.1    GFDF01004350    JAV09734.1    JRES01000641    KNC29683.1    CP012526    ALC46345.1    CM000364    EDX12900.1    CH480815    EDW42131.1    AE014297    AY058243    AAF55110.2    AAL13472.1    AAN13622.1    JXUM01121409    GAPW01001258    KQ566497    JAC12340.1    KXJ70078.1    CH902617    EDV42694.1    CH479179    EDW23910.1    GAMC01008640    JAB97915.1    GBXI01004480    JAD09812.1    AAAB01008811    EAA04978.5    GAKP01016525    JAC42427.1    CM000070    EAL27370.1    CH477341    EAT43098.1    EJY57583.1    APCN01004712    KA646050    AFP60679.1    AXCN02002488    EZ423967    ADD20243.1    ATLV01013404    KE524855    KFB37884.1    EZ423963    ADD20239.1    JXJN01007808    UFQS01000350    UFQT01000350    SSX03088.1    SSX23454.1    PZQS01000009    PVD24603.1    GALX01004304    JAB64162.1    GBHO01037220    GBRD01003126    GDHC01013504    JAG06384.1    JAG62695.1    JAQ05125.1    DS232268    EDS38798.1    ATLV01015566    KE525023    KFB40497.1    JXJN01002847    GFDL01007398    JAV27647.1    KK852856    KDR14885.1    APCN01004270    NNAY01003732    OXU18931.1    GL732541    EFX81896.1    AAAB01008960    EAA11844.1    CAQQ02103929    CCAG010001331    GDIQ01250243    JAK01482.1    LRGB01002121    KZS09086.1    GG666557    EEN55722.1    AXCN02000985    GL888145    EGI66611.1    GDIQ01166182    JAK85543.1    GDIP01212779    JAJ10623.1    AXCM01000865   
Pfam
PF00675   Peptidase_M16        + More
PF05193   Peptidase_M16_C
Interpro
IPR011249   Metalloenz_LuxS/M16        + More
IPR011765   Pept_M16_N       
IPR007863   Peptidase_M16_C       
IPR001431   Pept_M16_Zn_BS       
IPR037718   MPP_beat       
SUPFAM
SSF63411   SSF63411       
PDB
5GUP     E-value=3.60544e-109,     Score=1010

Ontologies

Topology

Length:
466
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00377000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00660
outside
1  -  466
 
 

Population Genetic Test Statistics

Pi
9.086554
Theta
15.215012
Tajima's D
-0.412121
CLR
0.00749
CSRT
0.261736913154342
Interpretation
Uncertain
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