Silkworm Genome Informatics Database

Gene

KWMTBOMO00024

Pre Gene Modal

BGIBMGA002080

Annotation

PREDICTED:_protein_tramtrack?_beta_isoform-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr1(+):607796-625330 View in EpiBrowser

Transcription factor

ZBTB

Location in the cell

Nuclear Reliability : 4.305

CDS

ATGGCGATGGCAGAACAGTTCTCGTTGCGGTGGAACGACTTCCATTCGAACTTGTCTCAGTCTTTTCACGCTTTGCTGGAAGGCGAGGACCTGGTGGACGTGACGCTTGCGGCGGGTGGCCAGTATGTCCATGCACACAAGCTTATCCTCTCGGTCTGCAGCCCTTATTTTAAGGAACTATTCAAGATGAATCCATGTGAGCATCCAATAGTAATTCTCAAAGATGTGGAGCTGCAAGAGCTACGTCAGCTCCTTCAGTTCATGTACCGAGGTGAGGTGCATGTACGTCAGCAAGAGTTATCCGGGTTCTTACACACAGCCGAGTTGCTTCAAGTTAAAGGCTTAACTGGTGGTAGGGAGAAGAGTGAGTCGCCACCTCCGGTGACAGAAGAGAAGCAAGTAACAAAACCAAGTATCTCGGAACCATCACCGGAGAGTCAACAGGAATGGGTGCCGGGCGGCGAGGACACCATCGCTACTGAGACTCTGGCTGAAACCTCTGACAGTGCATCAGTCAAAGAGGAAACCGTCAGAAGTCCTTTGAAAAGATTATTAAAAAATACGCCGAATAAAAACGCCAGCGTCAAGAAAAAACCTAGACCGGTCAACGACAGCCCCACACACCCCGAAAACACCGACTATGCCTACGACAGTGAACCTCTCATCGACTTCGACAACGACTTGTTTCACAGCGTGCTCGTCCTGCCCGAAACCAAGGAAGCCGGCTGGAATTGCAAGACGGGCGGCGTGAAGTGCCCGAACTGCCACCGGTTCTTCGCGAACCGCTACAACCTGAAGGTGCACATCCGGGACAAGCACGACACGCGCGAGGGCACGCTGCAGTGCGACATCTGCCAGAAGCGGATGCGCAACCCGTCGTGTCTGCGCGTGCACAAGTACCACCACCGCAAGCAGGCCGCCTACCTCGCTCAGCTGACGACGCAGGGTGATCAAATGAACGTTCAAAACATGGTTGGAGCTAAGTGGCGTGCTGATCCAGGTCTTGGGGTCGATTTCAGGGAATACGAGAACTCGCAGAGCTCTATGGGTAACAAATGGCGCAGTGAAACAGCGCTCTCTACTGATTACAAGGAGTATGAGAGTAGTCCACGGGCTACAACTCCTGGTCCGAACACGCCCGCAAGCCAAACGCCGGATAATAAGTATCAAGCTACAACGCCTGAACGATCTTCCAAATCCGAGAACGAAGACACGGTATGA

Protein

MAMAEQFSLRWNDFHSNLSQSFHALLEGEDLVDVTLAAGGQYVHAHKLILSVCSPYFKELFKMNPCEHPIVILKDVELQELRQLLQFMYRGEVHVRQQELSGFLHTAELLQVKGLTGGREKSESPPPVTEEKQVTKPSISEPSPESQQEWVPGGEDTIATETLAETSDSASVKEETVRSPLKRLLKNTPNKNASVKKKPRPVNDSPTHPENTDYAYDSEPLIDFDNDLFHSVLVLPETKEAGWNCKTGGVKCPNCHRFFANRYNLKVHIRDKHDTREGTLQCDICQKRMRNPSCLRVHKYHHRKQAAYLAQLTTQGDQMNVQNMVGAKWRADPGLGVDFREYENSQSSMGNKWRSETALSTDYKEYESSPRATTPGPNTPASQTPDNKYQATTPERSSKSENEDTV

Uniprot

H9IXU7 A0A2A4K091 A0A2H1W0Y4 A0A212EQF4 A0A194QXT6 A0A194PM03 + More
A0A2P1M8Z9 A0A0L7LHK7 A0A139WDL5 A0A067RH46 A0A0L7KZZ6

Pubmed

19121390 22118469 26354079 26227816 18362917 19820115 + More
24845553

EMBL

BABH01015629 NWSH01000334 PCG77314.1 ODYU01005594 SOQ46586.1 AGBW02013269 + More
OWR43722.1 KQ460953 KPJ10353.1 KQ459599 KPI94357.1 MG753771 AVP27098.1 JTDY01001079 KOB74937.1 KQ971358 KYB26004.1 KK852473 KDR23131.1 JTDY01004004 KOB68720.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000037510 + More
UP000007266 UP000027135

PRIDE

H9IXU7

Pfam

PF00651 BTB + More
PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR011333   SKP1/BTB/POZ_sf
IPR000210   BTB/POZ_dom

SUPFAM

SSF57667 SSF57667 + More
SSF54695 SSF54695

ProteinModelPortal

H9IXU7 A0A2A4K091 A0A2H1W0Y4 A0A212EQF4 A0A194QXT6 A0A194PM03 + More
A0A2P1M8Z9 A0A0L7LHK7 A0A139WDL5 A0A067RH46 A0A0L7KZZ6

PDB

4HXI E-value=2.2139e-07, Score=132

KEGG

101740159 no KO assigned | (RefSeq) protein tramtrack, beta isoform-like

GO

GO:0003676 GO:0005634 GO:0006357 GO:0005515 GO:0046872 GO:0004672 GO:0005524 GO:0048013 GO:0005003 GO:0005887 GO:0007169 GO:0016021

Length:

406

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00046

Exp number, first 60 AAs:

0.00046

Total prob of N-in:

0.00491

outside

1 - 406

Pi

19.442054

Theta

21.443681

Tajima's D

-1.077088

CLR

0.154538

CSRT

0.121193940302985

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics