SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00021  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002078
Annotation
PREDICTED:_haloacid_dehalogenase_isoform_X1_[Bombyx_mori]
Full name
Rhythmically expressed gene 2 protein      
Alternative Name
dREG-2
Location in the cell
Cytoplasmic   Reliability : 1.204 Mitochondrial   Reliability : 1.067 Nuclear   Reliability : 1.377
 

Sequence

CDS
ATGTGTCTGCAGGGTATAAGGGGAAGCGAAAGTGATGCTCAAAATAAGATGAGGGAAAACTTTAAAATGATGTGGGAACAGCATCCTAATTTTGGAAGGAATTCTATCCTCTGGGAAGAATGGTGGCGACAAGTGGTCAAGCTAACTTTACAAGATCATCTTCCAGTGGGTGCTGACACAAGAAGCTTAGGGAACACTTTAATCAATGATTTCAAAACCTCCAAATGTTGGGATGTAGCGGCTGGAAGCGATACATTGCTGCAAATAATAAAAAAGAAGGGGATAGCTATAGGAGTGATTTCGAATTCAGACCCTCGTCTTTACGATATTCTTCAAAATTTAGGCTTAAGTAAATATTTTGATTTCATTTTAACCTCTTATGATTGTGGATTTAGTAAACCTGATAGTAGAATATTTCAAGAAGCTCTTCTACGATGTAAAGAGATAACTAAGGCAAGTGAATCTTTGCATATCGGTGATGATCTTGAGAAGGATTACATTGGTGCAAGAGAATCTGGCTGGCATGCATTACTGATATCAAATAATGAAACCAAGATACCACCAGCTAAGGATCATGTGTTCGCAAATATAGATCTATTAAGTATAGCCATTAGTCAAAATAAACTTAAGTTAGTTTAA
Protein
MCLQGIRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQIIKKKGIAIGVISNSDPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKLKLV

Summary

Similarity
Belongs to the mitochondrial carrier (TC 2.A.29) family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Rhythmically expressed gene 2 protein
EMBL
DQ443229    ABF51318.1    BABH01015621    NWSH01001255    PCG71966.1    PCG71967.1    + More
ODYU01011053    SOQ56546.1    KQ460953    KPJ10350.1    KQ459599    KPI94354.1    GAIX01011504    JAA81056.1    GECU01037322    JAS70384.1    GEBQ01023693    GEBQ01017196    JAT16284.1    JAT22781.1    CVRI01000066    CRL06170.1    KK852656    KDR19263.1    CH933812    EDW06083.1    CH940655    EDW66069.1    CH902630    EDV38585.1    OUUW01000021    SPP89480.1    NEVH01011187    PNF32148.1    CH379064    EAL31742.1    BT022307    AAY54723.1    AE014298    AAF45954.1    KQ414627    KOC67469.1    CH479196    EDW27448.1    GL449444    EFN82671.1    KK117335    KFM70190.1    GL441149    EFN65098.1    GDAI01002786    JAI14817.1    CH954180    EDV45814.1    GL732623    EFX70275.1    ADTU01004413    CM000162    EDX01201.1    KQ435828    KOX71887.1    KQ976448    KYM85882.1    GL762961    EFZ20398.1    CM000366    EDX17077.1    KQ971318    EFA00363.1    GL888668    EGI58585.1    LBMM01002629    KMQ94569.1    UFQS01000372    UFQT01000372    SSX03285.1    SSX23651.1    KK854221    PTY13285.1    KZ288400    PBC26267.1    CH480819    EDW53165.1    KK107419    QOIP01000003    EZA51076.1    RLU24493.1    KQ982821    KYQ50192.1    CCAG010000247    EZ423074    ADD19350.1    JH431553    GEZM01036174    JAV82917.1    KQ769940    OAD52735.1    MWRG01007967    PRD27958.1    GFDL01009516    JAV25529.1    GDHF01033960    GDHF01030233    GDHF01015962    JAI18354.1    JAI22081.1    JAI36352.1    GEFH01004312    JAP64269.1    GDHC01003109    JAQ15520.1    CH916376    EDV95201.1    GAMC01009051    JAB97504.1    GEDC01017585    GEDC01001846    JAS19713.1    JAS35452.1    KQ434938    KZC12112.1    APGK01049588    KB741156    ENN73566.1    GAKP01002698    JAC56254.1    NEDP02005589    OWF37479.1    AJWK01007660    CM002912    KMY96696.1    CH480817    EDW49940.1    GFWV01002868    MAA27598.1    GDIQ01190979    JAK60746.1    NNAY01000997    OXU25559.1    KB199780    ESP04369.1    GACK01007064    JAA57970.1    ACPB03000235    GAHY01001994    JAA75516.1    UFQS01000439    UFQT01000439    SSX03959.1    SSX24324.1    DS235862    EEB19242.1    BT127335    KB632169    AEE62297.1    ERL89482.1    SSX03958.1    SSX24323.1    CH379070    EAL30307.1    GFPF01011343    MAA22489.1    U65492    AE014296    AY122086    AAM52598.1    GEDV01006476    JAP82081.1    GBHO01004744    GBRD01006064    JAG38860.1    JAG59757.1    CH954178    EDV50060.1    GBBI01001577    JAC17135.1    GDIP01068570    JAM35145.1    OUUW01000012    SPP87502.1    AJVK01009530    DS231855    EDS38194.1    JXUM01056768    KQ561924    KXJ77147.1    GANO01003203    JAB56668.1    GGLE01001968    MBY06094.1    CP012528    ALC49003.1    CH479208    EDW31236.1    GFAC01001003    JAT98185.1    GFJQ02002044    JAW04926.1    CM000363    EDX08704.1    BDGG01000002    GAU93000.1   
Pfam
PF13419   HAD_2        + More
PF13181   TPR_8
PF00153   Mito_carr
Interpro
IPR041492   HAD_2        + More
IPR036412   HAD-like_sf       
IPR011949   HAD-SF_hydro_IA_REG-2-like       
IPR023214   HAD_sf       
IPR006439   HAD-SF_hydro_IA       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR023395   Mt_carrier_dom_sf       
IPR018108   Mitochondrial_sb/sol_carrier       
SUPFAM
SSF56784   SSF56784        + More
SSF103506   SSF103506       
SSF48452   SSF48452       
Gene 3D
PDB
3K1Z     E-value=7.18937e-14,     Score=184

Ontologies

Topology

Length:
212
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000480000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05596
outside
1  -  212
 
 

Population Genetic Test Statistics

Pi
13.177105
Theta
10.794688
Tajima's D
0.457975
CLR
1.469533
CSRT
0.514124293785311
Interpretation
Uncertain
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