Gene

KWMTBOMO00021  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002078

Annotation

PREDICTED:_haloacid_dehalogenase_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(+):552536-553443      View in EpiBrowser

Full name

Rhythmically expressed gene 2 protein      

Alternative Name

dREG-2

Location in the cell

Cytoplasmic   Reliability : 1.204 Mitochondrial   Reliability : 1.067 Nuclear   Reliability : 1.377

CDS

ATGTGTCTGCAGGGTATAAGGGGAAGCGAAAGTGATGCTCAAAATAAGATGAGGGAAAACTTTAAAATGATGTGGGAACAGCATCCTAATTTTGGAAGGAATTCTATCCTCTGGGAAGAATGGTGGCGACAAGTGGTCAAGCTAACTTTACAAGATCATCTTCCAGTGGGTGCTGACACAAGAAGCTTAGGGAACACTTTAATCAATGATTTCAAAACCTCCAAATGTTGGGATGTAGCGGCTGGAAGCGATACATTGCTGCAAATAATAAAAAAGAAGGGGATAGCTATAGGAGTGATTTCGAATTCAGACCCTCGTCTTTACGATATTCTTCAAAATTTAGGCTTAAGTAAATATTTTGATTTCATTTTAACCTCTTATGATTGTGGATTTAGTAAACCTGATAGTAGAATATTTCAAGAAGCTCTTCTACGATGTAAAGAGATAACTAAGGCAAGTGAATCTTTGCATATCGGTGATGATCTTGAGAAGGATTACATTGGTGCAAGAGAATCTGGCTGGCATGCATTACTGATATCAAATAATGAAACCAAGATACCACCAGCTAAGGATCATGTGTTCGCAAATATAGATCTATTAAGTATAGCCATTAGTCAAAATAAACTTAAGTTAGTTTAA

Protein

MCLQGIRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQIIKKKGIAIGVISNSDPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKLKLV

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Keywords

Complete proteome   Reference proteome  

Feature

chain  Rhythmically expressed gene 2 protein

Uniprot

Q1HQ23   H9IXU5   A0A2A4JIR9   A0A2H1WU98   A0A194QZE7   A0A194PNN4   + More
S4NQK4   A0A1B6H6Z6   A0A1B6LGF6   A0A1J1J2I5   A0A067R9J0   B4L6T7   B4MA10   B3MXX0   A0A3B0KLI9   A0A2J7QU82   Q29HL6   Q4V6J9   Q9W4J7   A0A0L7R9G1   B4GXH1   E2BNR2   A0A087TYK1   E2AN96   A0A0K8TKE8   B3NU38   E9HDB9   A0A158NYZ6   B4Q049   A0A0M8ZVN5   A0A151I4H6   E9IG93   A0A1A9VBL8   B4R4I7   D6WED8   A0A1W4UPW2   F4X4N1   A0A0J7KWF3   A0A336KJ30   A0A2R7W4Z3   A0A2A3E3G5   B4I0Y4   A0A088A5N5   A0A026W639   A0A151WQL0   D3TNS2   T1IUQ4   A0A1A9W956   A0A1Y1MI01   A0A310SEL9   A0A2P6KNP7   A0A1Q3FDC8   A0A0K8TV50   A0A131XBG0   A0A146MAE4   B4JWS5   W8C5G2   A0A1B6D276   A0A154PJU2   N6TZ11   A0A034WNP8   A0A210PLW0   A0A1B0CDC3   A0A0J9RLC4   B4HVH5   A0A293LI98   A0A0N8BCL0   A0A232F4Z9   V4AJM9   L7M1N6   R4FLT8   A0A336KHP4   E0W0T6   J3JVR7   A0A336KJA3   Q29DV6   K7IW42   A0A224Z3F0   Q94915   Q8MR71   A0A131YVY2   A0A0A9ZAN0   B3NER5   A0A023F7B5   A0A0P5XRU7   A0A3B0K467   A0A1I8MM03   A0A1W4VS00   A0A1B0CZD0   B0W7Q0   A0A182GDU5   U5EH25   A0A2R5L9C3   A0A0M3QZ89   B4H4C1   A0A1E1XFZ7   A0A1Z5LBZ3   B4QLD1   A0A1D1UWM9  

Pubmed

19121390    26354079    23622113    24845553    17994087    15632085    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20798317    26369729    21292972    21347285    17550304    21282665    18362917    19820115    21719571    24508170    30249741    20353571    28004739    26823975    24495485    23537049    25348373    28812685    22936249    28648823    23254933    25576852    20566863    22516182    20075255    28797301    8749395    26830274    25401762    25474469    25315136    26483478    28503490    28528879    27649274   

EMBL

DQ443229    ABF51318.1    BABH01015621    NWSH01001255    PCG71966.1    PCG71967.1    + More
ODYU01011053    SOQ56546.1    KQ460953    KPJ10350.1    KQ459599    KPI94354.1    GAIX01011504    JAA81056.1    GECU01037322    JAS70384.1    GEBQ01023693    GEBQ01017196    JAT16284.1    JAT22781.1    CVRI01000066    CRL06170.1    KK852656    KDR19263.1    CH933812    EDW06083.1    CH940655    EDW66069.1    CH902630    EDV38585.1    OUUW01000021    SPP89480.1    NEVH01011187    PNF32148.1    CH379064    EAL31742.1    BT022307    AAY54723.1    AE014298    AAF45954.1    KQ414627    KOC67469.1    CH479196    EDW27448.1    GL449444    EFN82671.1    KK117335    KFM70190.1    GL441149    EFN65098.1    GDAI01002786    JAI14817.1    CH954180    EDV45814.1    GL732623    EFX70275.1    ADTU01004413    CM000162    EDX01201.1    KQ435828    KOX71887.1    KQ976448    KYM85882.1    GL762961    EFZ20398.1    CM000366    EDX17077.1    KQ971318    EFA00363.1    GL888668    EGI58585.1    LBMM01002629    KMQ94569.1    UFQS01000372    UFQT01000372    SSX03285.1    SSX23651.1    KK854221    PTY13285.1    KZ288400    PBC26267.1    CH480819    EDW53165.1    KK107419    QOIP01000003    EZA51076.1    RLU24493.1    KQ982821    KYQ50192.1    CCAG010000247    EZ423074    ADD19350.1    JH431553    GEZM01036174    JAV82917.1    KQ769940    OAD52735.1    MWRG01007967    PRD27958.1    GFDL01009516    JAV25529.1    GDHF01033960    GDHF01030233    GDHF01015962    JAI18354.1    JAI22081.1    JAI36352.1    GEFH01004312    JAP64269.1    GDHC01003109    JAQ15520.1    CH916376    EDV95201.1    GAMC01009051    JAB97504.1    GEDC01017585    GEDC01001846    JAS19713.1    JAS35452.1    KQ434938    KZC12112.1    APGK01049588    KB741156    ENN73566.1    GAKP01002698    JAC56254.1    NEDP02005589    OWF37479.1    AJWK01007660    CM002912    KMY96696.1    CH480817    EDW49940.1    GFWV01002868    MAA27598.1    GDIQ01190979    JAK60746.1    NNAY01000997    OXU25559.1    KB199780    ESP04369.1    GACK01007064    JAA57970.1    ACPB03000235    GAHY01001994    JAA75516.1    UFQS01000439    UFQT01000439    SSX03959.1    SSX24324.1    DS235862    EEB19242.1    BT127335    KB632169    AEE62297.1    ERL89482.1    SSX03958.1    SSX24323.1    CH379070    EAL30307.1    GFPF01011343    MAA22489.1    U65492    AE014296    AY122086    AAM52598.1    GEDV01006476    JAP82081.1    GBHO01004744    GBRD01006064    JAG38860.1    JAG59757.1    CH954178    EDV50060.1    GBBI01001577    JAC17135.1    GDIP01068570    JAM35145.1    OUUW01000012    SPP87502.1    AJVK01009530    DS231855    EDS38194.1    JXUM01056768    KQ561924    KXJ77147.1    GANO01003203    JAB56668.1    GGLE01001968    MBY06094.1    CP012528    ALC49003.1    CH479208    EDW31236.1    GFAC01001003    JAT98185.1    GFJQ02002044    JAW04926.1    CM000363    EDX08704.1    BDGG01000002    GAU93000.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000183832    UP000027135    + More
UP000009192    UP000008792    UP000007801    UP000268350    UP000235965    UP000001819    UP000000803    UP000053825    UP000008744    UP000008237    UP000054359    UP000000311    UP000008711    UP000000305    UP000005205    UP000002282    UP000053105    UP000078540    UP000078200    UP000000304    UP000007266    UP000192221    UP000007755    UP000036403    UP000242457    UP000001292    UP000005203    UP000053097    UP000279307    UP000075809    UP000092444    UP000091820    UP000001070    UP000076502    UP000019118    UP000242188    UP000092461    UP000215335    UP000030746    UP000015103    UP000009046    UP000030742    UP000002358    UP000095301    UP000092462    UP000002320    UP000069940    UP000249989    UP000092553    UP000186922   

PRIDE

Q1HQ23    H9IXU5    Q4V6J9    Q9W4J7    Q94915    Q8MR71    + More

Pfam

PF13419   HAD_2        + More
PF13181   TPR_8
PF00153   Mito_carr

Interpro

IPR041492   HAD_2        + More
IPR036412   HAD-like_sf       
IPR011949   HAD-SF_hydro_IA_REG-2-like       
IPR023214   HAD_sf       
IPR006439   HAD-SF_hydro_IA       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR023395   Mt_carrier_dom_sf       
IPR018108   Mitochondrial_sb/sol_carrier       

SUPFAM

SSF56784   SSF56784        + More
SSF103506   SSF103506       
SSF48452   SSF48452       

Gene 3D

3.40.50.1000     1.25.40.10     1.50.40.10    

ProteinModelPortal

Q1HQ23   H9IXU5   A0A2A4JIR9   A0A2H1WU98   A0A194QZE7   A0A194PNN4   + More
S4NQK4   A0A1B6H6Z6   A0A1B6LGF6   A0A1J1J2I5   A0A067R9J0   B4L6T7   B4MA10   B3MXX0   A0A3B0KLI9   A0A2J7QU82   Q29HL6   Q4V6J9   Q9W4J7   A0A0L7R9G1   B4GXH1   E2BNR2   A0A087TYK1   E2AN96   A0A0K8TKE8   B3NU38   E9HDB9   A0A158NYZ6   B4Q049   A0A0M8ZVN5   A0A151I4H6   E9IG93   A0A1A9VBL8   B4R4I7   D6WED8   A0A1W4UPW2   F4X4N1   A0A0J7KWF3   A0A336KJ30   A0A2R7W4Z3   A0A2A3E3G5   B4I0Y4   A0A088A5N5   A0A026W639   A0A151WQL0   D3TNS2   T1IUQ4   A0A1A9W956   A0A1Y1MI01   A0A310SEL9   A0A2P6KNP7   A0A1Q3FDC8   A0A0K8TV50   A0A131XBG0   A0A146MAE4   B4JWS5   W8C5G2   A0A1B6D276   A0A154PJU2   N6TZ11   A0A034WNP8   A0A210PLW0   A0A1B0CDC3   A0A0J9RLC4   B4HVH5   A0A293LI98   A0A0N8BCL0   A0A232F4Z9   V4AJM9   L7M1N6   R4FLT8   A0A336KHP4   E0W0T6   J3JVR7   A0A336KJA3   Q29DV6   K7IW42   A0A224Z3F0   Q94915   Q8MR71   A0A131YVY2   A0A0A9ZAN0   B3NER5   A0A023F7B5   A0A0P5XRU7   A0A3B0K467   A0A1I8MM03   A0A1W4VS00   A0A1B0CZD0   B0W7Q0   A0A182GDU5   U5EH25   A0A2R5L9C3   A0A0M3QZ89   B4H4C1   A0A1E1XFZ7   A0A1Z5LBZ3   B4QLD1   A0A1D1UWM9  

PDB

3K1Z     E-value=7.18937e-14,     Score=184

KEGG

732936    no KO assigned | (RefSeq) haloacid dehalogenase

GO

GO:0016787   GO:0016021   GO:0022857   GO:0008152   GO:0015074   GO:0004190   GO:0006508   GO:0005215   GO:0006810  

Length:

212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000480000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05596

outside

1  -  212

 

 

Pi

13.177105

Theta

10.794688

Tajima's D

0.457975

CLR

1.469533

CSRT

0.514124293785311

Interpretation

Uncertain