Gene

KWMTBOMO00014

Pre Gene Modal

BGIBMGA012989

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr1(+):404906-408969      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.669

CDS

ATGGCGTCAACAGTTCCAGTAACAAACGCCATAAATTATTACCCACAACTTAACGTGGAAAATTACAATAGCTGGAAGTTTCGACTGAGATGTCTATTAGACGAAAAATCTTTGTTAGAGGTAGCGTCAAGTGGCGTTATAGAATTAAAACAAAAAACTGCTGATGCGGCTGCAAAAGCCTTAATAGTAAAATGTGTACCCGATAAGTACTTGGACATCATAAAAGATGCAACAACTAGCTACACAATGTTAGCCAGTCTGGATAAAGTTTTTGAGAGAAAAGGTATTTTCACTAAATTACACTTGCGAAGAAAGTTATTGTCTCTTAAGCTGAGGGATGATAAATTGGAAGACTATTTCATGAGATTTGAAAGTCTGATTAGAGAAATAGAAAATATTGATAAAAAGATGGATGAAGAAGATAAAATATGTTATTTGCTGACGGGTATGTCGGAAAAGTACAACACAGTGATAACTGCTATTGAAACAATGTCTGCAGATAAAATTGACATGGAGTTTGTCAAGGCTCGGTTATTGGACGAAGAACTCAAACTGAATAATAAAGGTGAAGAGTATAATGATACAAAGAATGATGTAAGTTTTACTGCCTCAAGTGTAGAATGTTATCGTTGCCACAAAAAGGGCCATTTTGCACGTGAATGTAGAAGCAGAGGTTGTGGCTATTCAAGGAGAAACATTAATAATAAAGGTATATGTGGTAAAAACAGAACTGAAGAACAAAATAATATGACAGAAAGCATCCCAGAGAATAAATATAATTTTCTAGCAATAACGGAGTGTAATCTAAGTAAAGAAGACAAATTTATAGAATTTATAATAGATTCAGGAGCTACAGAAAATCTTATCAAGGAAGAATTGGAGAAATACATGTATGAAATTAAGAAACTACCAAATAAAATAAAAATTAAGATTGCAAATGGAGAAATATTAGAGGCTGACAAGAAAGGAAAGATAACCATAAGAGATAAAAATAATAATACTATAAATATAGAAGCGTTAATGGTCCCAGGGATTTATCATAATATAATATCTGTAAGAAACTTAAATATGAAAGGAAATAAAGTTGTTTTTACAAAATTTGGAGCACAAATAATAAATGGAAGAAAAGTCTTAAAATGTTCAGATAGAAATGGTTTATATATAGTACAAGGCGAAATAATACTAATAGAAGAAGCGAACTCAAGTGTACAGCAAGACAAAAATATTTGGCACCAACGTCTCGGACACTTAAATAGGAAATCATTAAAAATTATGGGTTTACCTGTGTCTGATGAAACATGTGGTCCTTGCATGAAGGGAAAATCTACTCGTTTACCATTCTATCCAGTTGACAGGCCAAGAAGTAGAAAAATAGGAGAATTATTGCATACAGATATTGGAGGTCCTGTATCACCAATTTCTTATGATGAAAAACAATATTACCAGACCATAACTGATGATTTTTCTCATTTTGTGACTGTTTATCTATTAAAGAATAAATCTGAAGCCACAAGAAATTTAATAAATCATATAAAGGAGTTAGAAAGACAAAAGGAAACTAAAGTTAAACGCATAAGATGTGATAATGGTGGAGAGTTCACCGCTGGCTGTTTGAAGCAATTTTGTATGGAAAATGGAATTATAATAGAGTATAGTCAACCTTACACACCACAACAAAATGGTGTGGCAGAGAGGCTAAACAGAACATTACTAGATAAGTCAAGAACTTTATTAAGTGAAACTGGATTACCTAAATATTTGTGGTCTGAGGCTATAATGTGTGCAGCATATCAATTGAATCGATGCCCATCAAGATCTATAAAGTATAAGATACCAGCTGAAATATACTACGGACTAGAAAATGTTAACTTGAACAAGTTAAAGGTATTTGGTTCTAAAGCATGGTATACGTGTGTCCCACAGAATAAGAAATTAGATAATAGAGCTGAAGAAGCCATTATGGTTGGCTATGGCAAACAAGGTTATAGATTATGGAATCCAAAAACAACAGAAATAATATTCTGCAGAGATGTCAAGTTTGATGAAAAGTACTATGAACATAAAAACAGTATTAAAAATAACAACTATATTTATTTACCAGAAGAGGACACACAAAATGAAGTTATGTGCAATGATAAAAATAAAATTGAGGAAGAAAAAGTAATACAGAAAAATGAAGAGACAGACACAAAAAGAACTAGATCAGGAAGGATAATAAAGCAACCTGATTATCTAAAGAATTTTGGGACGTACACAGCATATTGTTACTTAGTGTGTAATGACCCAGAAAGCTATGAAGAAGCGATAAAAGAAGTTTCATGGAAAGAAGCGATACATAAGGAATTAGCAGCACTTGAGAACTTACAAAGCTGGGAAGAGACTAAACTACCGAAAGGAAAATTAGCTATAGACACTAAGTGGGTTTTTAGAACGAAAGACGATGGCACTAAGAAAGCCAGATTAGTCGCTCGAGGTTTTCAAATAAAAAATTATGAGAATGAAATATTCTACAGTCCTGTAGTAAGAATGTCTACGATAAGAGCATTTTTTGTAAAAGCTATCCAAGAAGGATACAAATTAAGGCAATTGGATATTCCTACAGCCTTTCTCAATGGATTTCTTGATAGTGAAGTTTATATAAAAATACCCAAAGGCAAAGAAAACAAAGATGGAATAGTTTTGAGGTTAAAGAGAGCATTGTATGGATTAAAAGAAAGCCCTAAATGCTGGAACATGAGATTTGATGAATTTGCAAGAAAGAATGGATTGATACAGTCATTACATGATTGTTGTCTATACACAGATAAAAATATATGGCTTATAATATTTGTAGATGATATTTTATTAATTGGAATGGAAAAGGATACAGAAAAAATTATTAATAAATTGAAGCAAGAATTTAAAGCTAAAGATTTAGGACAGATTGAGAAATATCTTGGTATGGAAATTAAACAGGAAGAAAGTAAATTAACGATTAAACAAGAAAAGATAATTGAGAAGATACTAGAAAAATTTGGAATGTCAGAATGTAAAGGTATAGGAACACCTATGGAGGTAAATTTTCAAATAAACAAAAATGAGAAGATTATTGATGTACCATATCGACAACTCATAGGAAGCATAATGTATTTGGCTACTATGTCCAGACCAGATCTGCAGTTTGCTGTATCATATCTTAGCAGATACCTAGACTGTCCTACTCAACAGACTTGGAAAGCTGGAAAGAGAATTCTGCAATACCTAAAAGCTACAAAAGACAAAATGTTAGTTTTTCAAAAAAGGAATAATCTAGATGTGGATTTATGTGCATATTCAGACTCTGATTGGGCAGGTGATATTGTTGATCGCAAAAGTGTCAGTGGGGGTATCATAATGTGTAGTGATAATCCTGTATTTTGGTACTCTAGAAAACAAAGTTGTGTTGCATTATCGACAGCAGAATCAGAGTACATTGCTAGTGCTTGTTGTGCTCAAGAGTTAGTGTATTTGAAAGGTGTACTGTGTGATTTTGGATATGAATGTAAATTGACTTTATTTATGGATAATAAGGGAGCAATATGTTTAGCGAAGTCAAATGAAAACTCTAAAAGGAGTAAGCATATTGATATAAGGATGCACTATATTAAGGACTTGGTGAGGAATAATGTATTAGATATTGAATATGTGTCATCTGATAAAAATATTGCTGATATTTGTACAAAATCTTTATGCAAAGAAAAGTTTGTATTTTTTAGAAGTTTGTTACTAAAGTAA

Protein

MASTVPVTNAINYYPQLNVENYNSWKFRLRCLLDEKSLLEVASSGVIELKQKTADAAAKALIVKCVPDKYLDIIKDATTSYTMLASLDKVFERKGIFTKLHLRRKLLSLKLRDDKLEDYFMRFESLIREIENIDKKMDEEDKICYLLTGMSEKYNTVITAIETMSADKIDMEFVKARLLDEELKLNNKGEEYNDTKNDVSFTASSVECYRCHKKGHFARECRSRGCGYSRRNINNKGICGKNRTEEQNNMTESIPENKYNFLAITECNLSKEDKFIEFIIDSGATENLIKEELEKYMYEIKKLPNKIKIKIANGEILEADKKGKITIRDKNNNTINIEALMVPGIYHNIISVRNLNMKGNKVVFTKFGAQIINGRKVLKCSDRNGLYIVQGEIILIEEANSSVQQDKNIWHQRLGHLNRKSLKIMGLPVSDETCGPCMKGKSTRLPFYPVDRPRSRKIGELLHTDIGGPVSPISYDEKQYYQTITDDFSHFVTVYLLKNKSEATRNLINHIKELERQKETKVKRIRCDNGGEFTAGCLKQFCMENGIIIEYSQPYTPQQNGVAERLNRTLLDKSRTLLSETGLPKYLWSEAIMCAAYQLNRCPSRSIKYKIPAEIYYGLENVNLNKLKVFGSKAWYTCVPQNKKLDNRAEEAIMVGYGKQGYRLWNPKTTEIIFCRDVKFDEKYYEHKNSIKNNNYIYLPEEDTQNEVMCNDKNKIEEEKVIQKNEETDTKRTRSGRIIKQPDYLKNFGTYTAYCYLVCNDPESYEEAIKEVSWKEAIHKELAALENLQSWEETKLPKGKLAIDTKWVFRTKDDGTKKARLVARGFQIKNYENEIFYSPVVRMSTIRAFFVKAIQEGYKLRQLDIPTAFLNGFLDSEVYIKIPKGKENKDGIVLRLKRALYGLKESPKCWNMRFDEFARKNGLIQSLHDCCLYTDKNIWLIIFVDDILLIGMEKDTEKIINKLKQEFKAKDLGQIEKYLGMEIKQEESKLTIKQEKIIEKILEKFGMSECKGIGTPMEVNFQINKNEKIIDVPYRQLIGSIMYLATMSRPDLQFAVSYLSRYLDCPTQQTWKAGKRILQYLKATKDKMLVFQKRNNLDVDLCAYSDSDWAGDIVDRKSVSGGIIMCSDNPVFWYSRKQSCVALSTAESEYIASACCAQELVYLKGVLCDFGYECKLTLFMDNKGAICLAKSNENSKRSKHIDIRMHYIKDLVRNNVLDIEYVSSDKNIADICTKSLCKEKFVFFRSLLLK

Uniprot

O96968   A0A146L6N5   A0A0A9XG27   A0A146KTS1   A0A1B6DFK3   A0A0A9Z0I6   + More
A0A0A9WLY1   A0A1Y1L115   A0A1Y1MQF0   A0A224XA26   A0A182GA29   J9KJ72   A0A0A9ZBW6   A0A023F102   A0A0T6AT79   A0A182H4X3   A0A1W7R6I5   A0A068B703   A0A182G1G7   A0A1Y1MJE9   A0A1B6C2D3   A0A151RCT9   A0A151TPU3   A0A151RPT4   A0A182GGE6   Q967L5   A0A0J7K6U3   A0A2N9IUL9   A0A1W7R6A3   A0A151TGP0   A0A0A9W6B0   A0A2N9JB15   A0A151TNK0   A0A146LT61   A0A1Y1LCN3   B8YLY6   Q9C739   Q9LH44   A0A2N9GX95   A0A2N9GHK9   A0A0N1ICY1   A0A151QNH5   A0A151RJN4   A0A151TMN9   A0A224XJ98   B8YLY4   A0A151SDY6   B8YLY3   A0A059QBK0   Q9SXB2   A0A1Y1M2G6   A0A0A9XEU3   A0A151R6U8   Q9C536   A0A194RJV9   A0A0J7K6W1   B8YLY5   Q9M2D1   A0A0V0RWJ3   A0A2Z6NRJ0   A0A2N9GHB5   A0A2N9F1W0   A0A151RAL1   A0A194RU38   A0A034VP82   A0A087SVE4   A0A151R2G6   A0A2A4J959   A0A131XNF9   A0A2R6RYD4   A0A1Y1MYL8   A0A151QZS0   A0A0P6K133   A0A0P6J144   A0A151TKT1   A0A061F3M7   A0A1Y1MYL6   A0A151T469   A0A0V0TUP0   A0A2K3N1R3   A0A2N9ESI4   A0A2N9J3Y8   E5SJ15   A0A151RBY1   E5SZD6   Q6L3N8   A0A1W7R685   A0A2N9HHD8   A0A151S6I6   E5SB91   A0A2K3MZ63   A0A2N9I1L5   A0A2N9FNY4   A0A151TIH6   A0A0V1APS7   A0A151SHZ9  

Pubmed

10333565    26823975    25401762    28004739    26483478    25474469    + More
22057054    11319273    19656907    10907853    26354079    24046770    25348373    29661190    26999592    23731509    24500806    28382043   

EMBL

AB014676    BAA74713.1    GDHC01015802    JAQ02827.1    GBHO01027564    JAG16040.1    + More
GDHC01019310    JAP99318.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    GBHO01004832    JAG38772.1    GBHO01035173    JAG08431.1    GEZM01072005    JAV65635.1    GEZM01028916    JAV86196.1    GFTR01008662    JAW07764.1    JXUM01155348    KQ572178    KXJ68066.1    ABLF02041793    GBHO01002761    JAG40843.1    GBBI01004033    JAC14679.1    LJIG01022881    KRT78250.1    JXUM01025857    KQ560736    KXJ81076.1    GEHC01000878    JAV46767.1    KF740825    AIC77183.1    JXUM01136904    KQ568499    KXJ68982.1    GEZM01032204    JAV84770.1    GEDC01029908    JAS07390.1    KQ483843    KYP40337.1    CM003606    KYP69041.1    KQ483623    KYP44533.1    JXUM01011189    KQ560325    KXJ83029.1    AY009101    AAK12626.1    LBMM01012492    KMQ86193.1    OIVN01006211    SPD27863.1    GEHC01000959    JAV46686.1    CM003608    KYP66220.1    GBHO01040663    JAG02941.1    OIVN01006466    SPD33659.1    KYP68607.1    GDHC01007678    JAQ10951.1    GEZM01063091    JAV69316.1    FJ544856    ACL97386.1    AC073555    AAG60117.1    AP002064    BAB01972.1    OIVN01002473    SPD03944.1    OIVN01001931    SPC99063.1    KQ460882    KPJ11482.1    KQ485638    KYP31826.1    KQ483702    KYP42748.1    KYP68287.1    GFTR01008327    JAW08099.1    FJ544853    ACL97384.1    KQ483417    KYP53032.1    FJ544851    ACL97383.1    KF303287    AGW47867.1    AC007259    AAD50001.1    GEZM01044912    JAV78046.1    GBHO01024362    JAG19242.1    KQ484038    KYP38095.1    AC079604    AC079131    AAG50698.1    AAG50765.1    KQ460297    KPJ16236.1    LBMM01012645    KMQ86082.1    FJ544854    ACL97385.1    AL137898    CAB71063.1    JYDL01000068    KRX18751.1    DF973742    GAU39052.1    OIVN01001906    SPC98838.1    OIVN01000486    SPC81000.1    KQ483890    KYP39660.1    KQ459875    KPJ19636.1    GAKP01015342    JAC43610.1    KK112142    KFM56833.1    KQ484186    KYP36645.1    NWSH01002292    PCG68657.1    PCG68658.1    GEFH01000951    JAP67630.1    NKQK01000002    PSS35035.1    GEZM01017328    JAV90763.1    KQ484324    KYP35753.1    GDUN01000215    JAN95704.1    GDUN01000217    JAN95702.1    CM003607    KYP67664.1    CM001883    EOY11267.1    GEZM01017329    JAV90762.1    CM003610    KYP61818.1    KYP63036.1    JYDJ01000136    KRX42725.1    ASHM01015075    PNX96991.1    OIVN01000279    SPC77544.1    OIVN01006353    SPD31284.1    KQ483853    KYP40164.1    AC149291    AAT38758.1    GEHC01000966    JAV46679.1    OIVN01003431    SPD11153.1    KQ483456    KYP50361.1    ASHM01014140    PNX96091.1    OIVN01004651    SPD18552.1    OIVN01001308    SPC92446.1    KYP66838.1    JYDH01000330    KRY26802.1    CM003613    KYP54398.1   

Proteomes

UP000069940    UP000249989    UP000007819    UP000075243    UP000036403    UP000053240    + More
UP000054630    UP000054359    UP000218220    UP000241394    UP000026915    UP000055048    UP000236291    UP000054776   

PRIDE

O96968   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219
PF13358   DDE_3

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR038717   Tc1-like_DDE_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10     2.40.70.10    

ProteinModelPortal

O96968   A0A146L6N5   A0A0A9XG27   A0A146KTS1   A0A1B6DFK3   A0A0A9Z0I6   + More
A0A0A9WLY1   A0A1Y1L115   A0A1Y1MQF0   A0A224XA26   A0A182GA29   J9KJ72   A0A0A9ZBW6   A0A023F102   A0A0T6AT79   A0A182H4X3   A0A1W7R6I5   A0A068B703   A0A182G1G7   A0A1Y1MJE9   A0A1B6C2D3   A0A151RCT9   A0A151TPU3   A0A151RPT4   A0A182GGE6   Q967L5   A0A0J7K6U3   A0A2N9IUL9   A0A1W7R6A3   A0A151TGP0   A0A0A9W6B0   A0A2N9JB15   A0A151TNK0   A0A146LT61   A0A1Y1LCN3   B8YLY6   Q9C739   Q9LH44   A0A2N9GX95   A0A2N9GHK9   A0A0N1ICY1   A0A151QNH5   A0A151RJN4   A0A151TMN9   A0A224XJ98   B8YLY4   A0A151SDY6   B8YLY3   A0A059QBK0   Q9SXB2   A0A1Y1M2G6   A0A0A9XEU3   A0A151R6U8   Q9C536   A0A194RJV9   A0A0J7K6W1   B8YLY5   Q9M2D1   A0A0V0RWJ3   A0A2Z6NRJ0   A0A2N9GHB5   A0A2N9F1W0   A0A151RAL1   A0A194RU38   A0A034VP82   A0A087SVE4   A0A151R2G6   A0A2A4J959   A0A131XNF9   A0A2R6RYD4   A0A1Y1MYL8   A0A151QZS0   A0A0P6K133   A0A0P6J144   A0A151TKT1   A0A061F3M7   A0A1Y1MYL6   A0A151T469   A0A0V0TUP0   A0A2K3N1R3   A0A2N9ESI4   A0A2N9J3Y8   E5SJ15   A0A151RBY1   E5SZD6   Q6L3N8   A0A1W7R685   A0A2N9HHD8   A0A151S6I6   E5SB91   A0A2K3MZ63   A0A2N9I1L5   A0A2N9FNY4   A0A151TIH6   A0A0V1APS7   A0A151SHZ9  

PDB

3S3N     E-value=2.59438e-07,     Score=136

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0004491   GO:0016021   GO:0004519   GO:0004190   GO:0006508   GO:0005215   GO:0006810  

PANTHER

PTHR11439  

Length:

1250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0131

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00061

outside

1  -  1250

 

 

Pi

0

Theta

0

Tajima's D

-0.791117

CLR

3.292376

CSRT

0

Interpretation

Uncertain