Gene

KWMTBOMO00012

Pre Gene Modal

BGIBMGA002061

Annotation

PREDICTED:_protein_DDI1_homolog_[Bombyx_mori]

Location

Bomo_Chr1(-):399008-400305      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.178 Mitochondrial   Reliability : 1.109

CDS

ATGATGGCGCTTACTCTGGGATTCCGCGAACAAGCTTTGACCATCCTGGAAGCCTTAGATAAGGATGCAACAAAGGGTGGCAAGTACCGCCTAGCAGCAGCAGGGAAACGAATAAACGCCAGAATTACGGGGTGCTGGCTGGCGATTGAAGATGGGAACAGCCTGGCTATTAAAAACGAGGTCAATGGCACATCGTGTAAGCTGACACTGGACACTGGAGCTTCTCGGACTGTTACCAGCTTTAGAATAGCTAGTCGGTGTTTTGTGGACCACACTTACAACCAGGTAGGCACCAATTTAGTAACAACCACCGGTCAGCACATATCCGTCCGAGGTGAAAAGAAAGTGGAGCTGAAACTCGGCAGTGAAGTTTATCAGCACAATGCCATCGTGGCTGATATTGTTGACGACTGTATCGTGGGCTTGGACTTCATGAAAACACATAGTTGCGAGATCGACGTTAGACAAGGAGTGTTAAAATGTAGTCCAGAGGAGATCTCTATGGAAGGTGCATCATTTGGCAAAGTGTACTGCTTAAAAAGGAGTATCCTCACACCTAGGTCAGAAACGGTGGTGCCAGTCAGCTTACCACAGAAATCAAACAGTAAGCCTCGATGTGTTCTTACAGAAAGACTGGATGAGGAAATGTGA

Protein

MMALTLGFREQALTILEALDKDATKGGKYRLAAAGKRINARITGCWLAIEDGNSLAIKNEVNGTSCKLTLDTGASRTVTSFRIASRCFVDHTYNQVGTNLVTTTGQHISVRGEKKVELKLGSEVYQHNAIVADIVDDCIVGLDFMKTHSCEIDVRQGVLKCSPEEISMEGASFGKVYCLKRSILTPRSETVVPVSLPQKSNSKPRCVLTERLDEEM

Uniprot

H9IXS8   A0A2A4K0Q2   A0A2A4K4G2   A0A212EPT8   A0A087T3I4   A0A087SUZ9   + More
A0A087TBY4   A0A2C9L1Z0   W4XX45   W4YK45   A0A1A9Z2G5   A0A0P1A6M1   A0A2G8KF37   A0A329SNU4   H3GC14   A0A1B6C7A7   A0A081ARW7   W2NVH6   V9FN75   W2XLD3   W2QJ85   W2ZUQ2   W2JKT8   W2LPM0   W2NX13   V9FQ77   W2XJS9   W2QJY0   W2ZWW2   W2HBZ8   A0A081ARW5   W2LRL3   D0MRC6   A0A1B6KJB8   A0A3F2S3S5   A0A0W8DPB6   A0A0V1GTF0   A0A0V0T515  

Pubmed

19121390    22118469    15562597    29023486    16946064    19741609    + More

EMBL

BABH01015609    NWSH01000300    PCG77639.1    NWSH01000157    PCG78959.1    AGBW02013372    + More
OWR43512.1    KK113242    KFM59673.1    KK112080    KFM56688.1    KK114513    KFM62623.1    AAGJ04014650    AAGJ04005014    CCYD01000109    CEG35879.1    MRZV01000633    PIK46602.1    MJFZ01000106    RAW37666.1    DS565998    GEDC01028158    JAS09140.1    ANJA01000839    ETO81628.1    KI691612    ETM52490.1    ANIZ01000750    ETI52925.1    ANIX01000921    ETP22734.1    KI669575    ETN13218.1    ANIY01000944    ETP50711.1    KI685122    KI671631    ETK92785.1    ETL46203.1    KI678376    ETL99346.1    ETM52488.1    ETI52923.1    ETP22732.1    ETN13216.1    ETP50709.1    ETK92783.1    ETL46201.1    ETO81626.1    ETL99344.1    DS028118    EEY58045.1    GEBQ01028429    JAT11548.1    MBAD02001228    MBDO02000009    RLN56942.1    RLN68919.1    LNFO01000892    KUF98233.1    JYDP01000281    KRZ01533.1    JYDJ01000623    KRX34141.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000054359    UP000076420    UP000007110    + More
UP000092445    UP000054928    UP000230750    UP000251314    UP000005238    UP000028582    UP000054532    UP000018721    UP000018958    UP000018817    UP000018948    UP000053236    UP000053864    UP000054423    UP000006643    UP000277300    UP000284657    UP000052943    UP000055024    UP000055048   

PRIDE

H9IXS8    D0MRC6   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF13358   DDE_3
PF01498   HTH_Tnp_Tc3_2
PF00665   rve
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF09668   Asp_protease
PF00226   DnaJ
PF00627   UBA
PF00240   ubiquitin
PF01661   Macro
PF00077   RVP

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR002492   Transposase_Tc1-like       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR012337   RNaseH-like_sf       
IPR009057   Homeobox-like_sf       
IPR038717   Tc1-like_DDE_dom       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR041373   RT_RNaseH       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR015940   UBA       
IPR029071   Ubiquitin-like_domsf       
IPR001623   DnaJ_domain       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR036869   J_dom_sf       
IPR009060   UBA-like_sf       
IPR000626   Ubiquitin_dom       
IPR002589   Macro_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR018061   Retropepsins       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF46689   SSF46689       
SSF57756   SSF57756       
SSF46934   SSF46934       
SSF46565   SSF46565       
SSF54236   SSF54236       

Gene 3D

2.40.70.10     3.30.420.10     1.10.287.110     3.30.70.330    

CDD

cd05479  RP_DDI
cd06257  DnaJ

ProteinModelPortal

H9IXS8   A0A2A4K0Q2   A0A2A4K4G2   A0A212EPT8   A0A087T3I4   A0A087SUZ9   + More
A0A087TBY4   A0A2C9L1Z0   W4XX45   W4YK45   A0A1A9Z2G5   A0A0P1A6M1   A0A2G8KF37   A0A329SNU4   H3GC14   A0A1B6C7A7   A0A081ARW7   W2NVH6   V9FN75   W2XLD3   W2QJ85   W2ZUQ2   W2JKT8   W2LPM0   W2NX13   V9FQ77   W2XJS9   W2QJY0   W2ZWW2   W2HBZ8   A0A081ARW5   W2LRL3   D0MRC6   A0A1B6KJB8   A0A3F2S3S5   A0A0W8DPB6   A0A0V1GTF0   A0A0V0T515  

PDB

3S8I     E-value=0.000259144,     Score=102

KEGG

105842496    no KO assigned | (RefSeq) protein DDI1 homolog

GO

GO:0004190   GO:0003677   GO:0015074   GO:0006313   GO:0003676   GO:0005634   GO:0008270   GO:0043130  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00039

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.02383

outside

1  -  216

 

 

Pi

7.728444

Theta

28.654721

Tajima's D

-2.269772

CLR

4.067157

CSRT

0.00339983000849958

Interpretation

Uncertain