SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00011
Pre Gene Modal
BGIBMGA002076
Annotation
PREDICTED:_SET_and_MYND_domain-containing_protein_4_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.999
 

Sequence

CDS
ATGTCTCGAATTTACGAAGAAGTGGATCCCATATACGCTGCGACCTGTAGCGACATCACTCTTTGCTCAAATTCCAAAGGTTTCTTCAAGGGTCTCGCCGATGACCTGGTTTCATTAGCTGGGGAAGAATGGCTAAATAAATTTGAGCTAGTGGAAGATGGCAAGAAAGTTACATTTTTTATGGAGAATAAGGAGGTAATGGAAGCACTTACTGAAGTATTATCCAGGATACAGCCCCTTCACCGCGGGAAAGACGCTAGAATATCGAGTCAGAGGCGCGGCGACGCACAATCGGCTCTGAAGAATGAAGATCTAATGAAGGCGTTGGCGTTGGCAAGTCAAGCCGTACTCAGGGCTCCCGTTACGGGAGAAAATGAAGCGATTGACGGCGGGGTGTCGCTGGCTTTGGCGCTGTGGCTTCGGTCTGAGATCCTGCTGAAATTAAATAGACCTCAAGCCGCCCTAGAAGATTTGAAGTTAGCTCTAAAGGAACGCCTACCTGCCAGAATGCGAGCCCACTACTACTGGAGAATGGGACACTGCTACCGAGGTACCGGAGAGGCTACAAGAGCGAAGGTGTCGTATGAACTGGCCGGCCGACTGCTCGCTAAGGACGAGGTCGCCAAAACACAGCTAACTAAAGACATTGAAACTCTAGATTATACAGTACAATCGAAACGGCCGCCCGATAAGAATGCCACCACACTAACCGGAGGAGCGAAATTAAACTTGCCATCTTTATCGAAACTACTGAAAATAGTAGAAGAAGAGAACAAGGGTCGCTTCGCCGTGGCCAGTGCTCCGGTTCGAACGGGAGACGTCCTGCTGGTTGACAGTCCGTACGCAGCCTGCCTGCTCTCGGATTACTACGGAACGCACTGCCTTCATTGTTTCAGAAGGTTGGCGGACTGCGAAGAGTCGGCCCCGGTGTGGTGTCCCAAATGCTCAGGCGTTGTGTTCTGTAGTATCGAATGTCGCGATACTGCGGTTTCTTCGTATCACTCCTTTGAGTGCCAGTTCCTAGATCTATTTGTGGGTTCCGGAATGTCCATCCTGAGTCACATTGCTCTCAGAATGGTGACACAATCAGATCTCGAAACGTGTCTGACAATCCACTCAAAGTACATCTCCAATGACATTAAAACCGTTGAAGGGAGCGTGCTTAACGACATCGAAGGCGTTGCCAAAAAATCTAAAATGAAAAGTAGAAAAGAGAGACTGAATAGAAATAAGAAAAGCCATAAGATGTCTGTAGAGAAGAATGATAGAGTTGACGTAATGGAAGATAAACTGGAAGACAAAAATAATTTTGAAGAGAAGTTAGAATTGAAAGCGGCGCAAGTTTACTCTCTCTGTACACACTCTGACCGGAGAAGGGGTGATGATTACTTGAAGAGGATAGTGATGGGCTATTTCCTGACAGAATGCCTGAAGCACGCTGGATTTTTCAAAAACTGCAATAAAAATAATTTGACTAAAGCGCAACAGTCCATATGTGAACTGATAGTTCGCAACCTGCAGTTGTTACAATTCAACGCACACGAAATTTACGAGACCGTGCGAGGAGAGCACCAGTTCAGCGGGTCCAAGCCGCTCTATTTCGCTGTGGGGATCTACCCTGTCGGAGCACTCTTCAACCACGAGTGCTACCCCGCGGTCACCAGATATTTTGAGGGTCGTAAGATCGTCCTACGCGCAACGAGACCCCTGACTCCCGGAGAAGTGGTCTCCGAAAATTACGGACCGCACTTCATGATGCGGACCCTGAGGGAAAGGCAGCGAGCCCTCGCCTGCCGGTACTGGTTCCACTGTGAATGTACCGCTTGTAAGGAAGACTGGCCAACTATGAAGCAGATGAATAACGATTCTATTTCTTACATAAGATGTTCTAACCTCGCCTGCCGAGGTAAGCTCCGAGGGAGTGTCCAGCGGATGGGTGATCGATGCAGCCTATGCTCTACCCCTATAGACAAGGATCTAGTAACAGTTAAAATTGACACGATCAATAAATGCACGGCTCAGTATCAGGAAGGCGCCAAGTTAATGGACAAAGAGATGCCAGAAGAAGCCACCGCGACACTGTGCAGTGCTATAGACTCGTTTCACGAGGCAGGCCGGCCTCCTCACCTTGAAACGCACTTAGCCCAAGAAGCCTTAAGATCATGTTTTGCAGTACGTGGAAACATTCACATCCTGAAGAAGGATGGCGAAAAAGACAACGAAAACAAGTAA
Protein
MSRIYEEVDPIYAATCSDITLCSNSKGFFKGLADDLVSLAGEEWLNKFELVEDGKKVTFFMENKEVMEALTEVLSRIQPLHRGKDARISSQRRGDAQSALKNEDLMKALALASQAVLRAPVTGENEAIDGGVSLALALWLRSEILLKLNRPQAALEDLKLALKERLPARMRAHYYWRMGHCYRGTGEATRAKVSYELAGRLLAKDEVAKTQLTKDIETLDYTVQSKRPPDKNATTLTGGAKLNLPSLSKLLKIVEEENKGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCSGVVFCSIECRDTAVSSYHSFECQFLDLFVGSGMSILSHIALRMVTQSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGDDYLKRIVMGYFLTECLKHAGFFKNCNKNNLTKAQQSICELIVRNLQLLQFNAHEIYETVRGEHQFSGSKPLYFAVGIYPVGALFNHECYPAVTRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQRALACRYWFHCECTACKEDWPTMKQMNNDSISYIRCSNLACRGKLRGSVQRMGDRCSLCSTPIDKDLVTVKIDTINKCTAQYQEGAKLMDKEMPEEATATLCSAIDSFHEAGRPPHLETHLAQEALRSCFAVRGNIHILKKDGEKDNENK

Summary

Similarity
Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
EMBL
BABH01015606    BABH01015607    NWSH01002090    PCG69219.1    AGBW02014676    OWR41217.1    + More
KQ460953    KPJ10338.1    KQ459599    KPI94337.1    PYGN01000705    PSN41945.1    QOIP01000008    RLU19281.1    ADTU01024480    ADTU01024481    ADTU01024482    ADTU01024483    ADTU01024484    ADTU01024485    UFQS01000586    UFQT01000586    SSX05155.1    SSX25516.1    GBYB01009883    JAG79650.1    UFQT01000990    SSX28319.1    DS235465    EEB15939.1    KQ434856    KZC08688.1    GEDC01007782    JAS29516.1    GEDC01011594    JAS25704.1    KK853097    KDR11443.1    GDIQ01009517    JAN85220.1    GDIP01232185    JAI91216.1    KK107064    EZA60928.1    CVRI01000067    CRL06484.1    KQ414614    KOC68811.1    KQ978457    KYM93842.1    GDIQ01166523    JAK85202.1    GDIP01233322    JAI90079.1    GDIQ01190994    JAK60731.1    GDIQ01148619    JAL03107.1    GDIQ01035071    JAN59666.1    GDRN01080085    JAI62291.1    GDRN01080086    GDRN01080084    GDRN01080083    JAI62293.1    GBBI01003755    JAC14957.1    CH477274    EAT45183.1    HACA01009497    CDW26858.1    ABLF02026503    GL733993    EFX61914.1    GEDC01019561    JAS17737.1    GDIP01047248    JAM56467.1    GDIQ01204139    JAK47586.1    DS232465    EDS42182.1    GDIP01192235    JAJ31167.1    GDIP01014570    JAM89145.1    GDIP01065300    JAM38415.1    GDIQ01044758    JAN49979.1    GDIQ01148031    JAL03695.1    GDIQ01231737    JAK19988.1    GDIQ01091286    JAL60440.1    GDIQ01147980    JAL03746.1    GDIQ01093574    JAL58152.1   
Pfam
PF00856   SET        + More
PF16214   AC_N
PF06327   DUF1053
PF00211   Guanylate_cyc
PF01753   zf-MYND
Interpro
IPR001214   SET_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR018297   A/G_cyclase_CS       
IPR029787   Nucleotide_cyclase       
IPR032628   AC_N       
IPR001054   A/G_cyclase       
IPR009398   Adcy_conserved_dom       
IPR002893   Znf_MYND       
IPR013026   TPR-contain_dom       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF48452   SSF48452        + More
SSF55073   SSF55073       
Gene 3D
PDB
3OXG     E-value=1.49629e-06,     Score=127

Ontologies

Topology

Length:
743
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04909
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00027
outside
1  -  743
 
 

Population Genetic Test Statistics

Pi
23.560094
Theta
20.88344
Tajima's D
-1.903412
CLR
0.015593
CSRT
0.0184990750462477
Interpretation
Uncertain
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