Silkworm Genome Informatics Database

Gene

KWMTBOMO00010

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr1(+):340776-343812 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.867

CDS

ATGAAAATAAGAAAAAGAAAAAGGGCTATATCGGCGATCCCCTATTCCACATTTAATGTGGATTTCAGCAATGTCAGGGGCCTACATAGCAACCTTGACGCCGTACACCACCACCTTGAGACGGCGCAGCCTGCCCTACTGTTTCTGACGGAGACACAGATATCTGCTCCGGACGATACCTCTTACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTCCGGGCTGATGTTTGTTGTCGCCGTCTACGAGGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGTGGGCCGTAGCCGAATCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTGCAGCTCTGATAGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGATTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAGCCTTCTCTGTTGGACCTTCTGCTGACCACGGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCGCTTGGATCGTCCGATCACTGCCTTATCCGTGCTGCCGTACCACTCTCTCGTCCTTGTCGTCGAACGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGATTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGTTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTGTTCCCTCTTCTGAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCCGCATACGTGGCATGGGATGATGCCAGGAGGCGTCGGGATCCTAACATCTCAGAGGAAAGGCGGAAATATAACGCCGCCTCCAGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACACTCTGGCCCACAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACAGGGGTGCCACACCACCGAACATCCCCCGGTGTGATAGCTCCCTGCCGGAAATCTGCTTCACACAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGATGGCATCCCCGCAGTGGTTCTGAAAAAGTGCGCCCCTGAGCTGACGCCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAACAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTATAGGCCTATCGCGATAACTTCCCTGCTTTCCAAGGTGATGGAGCGAATAATAAACACACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGTTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGATCTGGCATAGGGCGCTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTCTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGATTGTTCTGATACCATGACCATTAATGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTTTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAGTGGGGTGAATCGAACTTAGTTCAATTCAACCCGTTGAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGCGAGCATCGGGATTCTTGGGGTCGACATTTCGAGTGATGTCCAATTTCGAAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTATTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGTTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTTCATTTGACTCCATACAGAGGAGGGCCGTTCGAATCGTCGATAATCCCATTCTCGCGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGAATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGGCATCGACAGTGCGTTTCCAGAGGTCTTTTCTGCCACGTACCATCCGGCTATGGAATGAGCTCCCTTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTTAAAAGAGGCTTGTGGAGAGTATTAAGCGATAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MKIRKRKRAISAIPYSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSLLWLRVDHVGRSRIYACLYRSHSSDAGAALIEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPCRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFVPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDDARRRRDPNISEERRKYNAASRSSLPPLRKSDDTLAHSAKEKADLLVKLFASNSTVDDRGATPPNIPRCDSSLPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKKCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRIWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGESNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSASIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLSFDSIQRRAVRIVDNPILADRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRASTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSDRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17 A0A3D5S1K1 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VPK5 + More
A0A0P4VX79 A0A2H9T4U7 A0A2H9T4N9 W4XMI9 W4XUR2 A0A2H9T4F1 W4YEI4 Q8WS60 W4Y4X9

Pubmed

30148503 24065732 29150518 11733140

EMBL

AY359886 AAQ57129.1 DPOC01000269 HCX22453.1 HAAD01000593 CDG66825.1 + More
GDRN01111334 JAI56796.1 GDRN01111277 JAI56804.1 GDRN01111278 JAI56803.1 GDRN01111326 JAI56798.1 NSIT01000225 PJE78229.1 NSIT01000234 PJE78200.1 AAGJ04112043 AAGJ04060226 NSIT01000271 PJE78081.1 AAGJ04103823 AH011247 AAL40415.1 AAGJ04110620

Proteomes

UP000007110

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF00096   zf-C2H2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR011011   Znf_FYVE_PHD
IPR019787   Znf_PHD-finger
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667
SSF57903   SSF57903

Gene 3D

3.60.10.10 3.30.40.10

ProteinModelPortal

Q6UV17 A0A3D5S1K1 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VPK5 + More
A0A0P4VX79 A0A2H9T4U7 A0A2H9T4N9 W4XMI9 W4XUR2 A0A2H9T4F1 W4YEI4 Q8WS60 W4Y4X9

PDB

6AR3 E-value=2.99059e-05, Score=117

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0016021 GO:0003676 GO:0046872

PANTHER

PTHR45951:SF3

Length:

942

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01183

Exp number, first 60 AAs:

0.00362

Total prob of N-in:

0.00065

outside

1 - 942

Pi

2.701981

Theta

13.38567

Tajima's D

-1.668241

CLR

0.39239

CSRT

0.0356482175891205

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree